RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 PORP16435 677 aaPredicted RBP10.97□□□□□ -0.65
NPHP4-204ENST00000460696 CHRNEQ04844 493 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 BCL7AQ4VC05 210 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 SYT6Q5T7P8 510 aaPredicted RBP10.97□□□□□ -0.65
NPHP4-204ENST00000460696 ZNF544Q6NX49 715 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 ZC3H14Q6PJT7 736 aaKnown RBP10.97□□□□□ -0.65
NPHP4-204ENST00000460696 FRRS1Q6ZNA5 592 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 ZNF765Q7L2R6 523 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 VRK2Q86Y07 508 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 TMEFF1Q8IYR6 380 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 OR2L5Q8NG80 312 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 DNAJA3Q96EY1 480 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 LYARQ9NX58 379 aaKnown RBP10.97□□□□□ -0.65
NPHP4-204ENST00000460696 PMF1-BGLAPU3KQ54 211 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 CKAP5Q14008 2032 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 PCM1Q15154 2024 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 CHURC1-FNTBB4DL54 471 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 WWP2O00308 870 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 ZNF888P0CJ79 500 aaPredicted RBP10.97□□□□□ -0.65
NPHP4-204ENST00000460696 PVRP15151 417 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 GNSP15586 552 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 CBLP22681 906 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 GIPRP48546 466 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 ZNF91Q05481 1191 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 ZNF267Q14586 743 aaPredicted RBP10.97□□□□□ -0.65
NPHP4-204ENST00000460696 OR2T33Q8NG76 320 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 NEIL3Q8TAT5 605 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 CNDP2Q96KP4 475 aaKnown RBP10.97□□□□□ -0.65
NPHP4-204ENST00000460696 NRTNQ99748 197 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 BCL7BQ9BQE9 202 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 TTYH1Q9H313 450 aaPredicted RBP10.97□□□□□ -0.65
NPHP4-204ENST00000460696 GLIPR2Q9H4G4 154 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 SLC52A3Q9NQ40 469 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 SIT1Q9Y3P8 196 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 PCDHGB6Q9Y5F9 930 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 KCNE1BA0A087WTH5 132 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 A0A1W2PPK0 400 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 NARSO43776 548 aaKnown RBP10.97□□□□□ -0.65
NPHP4-204ENST00000460696 RCBTB2O95199 551 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 TNFP01375 233 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 CD40LGP29965 261 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 CAPZA2P47755 286 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 MRPL19P49406 292 aaKnown RBP10.97□□□□□ -0.65
NPHP4-204ENST00000460696 SHC2P98077 582 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 FIGLAQ6QHK4 219 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 Q6ZNX1 250 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 FAM220AQ7Z4H9 259 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 KLBQ86Z14 1044 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 GATSQ8NAP1 163 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 VMP1Q96GC9 406 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 NELL2Q99435 816 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 MCUBQ9NWR8 336 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 GDE1Q9NZC3 331 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 CMAHPQ9Y471 501 aa10.97□□□□□ -0.65
NPHP4-204ENST00000460696 A0A0G2JPF8 293 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 CD8B2A6NJW9 211 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 FAM183AA6NL82 134 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 HNRNPCL3B7ZW38 293 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 H3BSH0 61 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 TMPRSS11DO60235 418 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 LDB3O75112 727 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 SLC25A12O75746 678 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 HNRNPCL4P0DMR1 293 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 CD8BP10966 210 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 SLC19A1P41440 591 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 CD83Q01151 205 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 DSG2Q14126 1118 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 CDKN3Q16667 212 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 TMEM44Q2T9K0 475 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 OR2G6Q5TZ20 316 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 GPR135Q8IZ08 494 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 ANKK1Q8NFD2 765 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 MOAP1Q96BY2 351 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 COQ10AQ96MF6 247 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 BEX2Q9BXY8 128 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 SLC22A4Q9H015 551 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 RPRD1BQ9NQG5 326 aaKnown RBP10.96□□□□□ -0.65
NPHP4-204ENST00000460696 C1GALT1Q9NS00 363 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 ACER3Q9NUN7 267 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 PPIL1Q9Y3C6 166 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 ATG4BQ9Y4P1 393 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 TRPM7Q96QT4 1865 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 CCDC88CQ9P219 2028 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 PLD2O14939 933 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 REM1O75628 298 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 FUCA1P04066 466 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 GKN3PP0CG01 181 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 ZFP36L2P47974 494 aaKnown RBP10.96□□□□□ -0.65
NPHP4-204ENST00000460696 CSNK1G2P78368 415 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 FLYWCH1Q4VC44 716 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 XAF1Q6GPH4 301 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 B3GLCTQ6Y288 498 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 ADAMTS16Q8TE57 1224 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 ASB16Q96NS5 453 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 TMEM38AQ9H6F2 299 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 EGLN3Q9H6Z9 239 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 HCN2Q9UL51 889 aa10.96□□□□□ -0.65
NPHP4-204ENST00000460696 DICER1Q9UPY3 1922 aaKnown RBP10.96□□□□□ -0.66
NPHP4-204ENST00000460696 RALGAPA2Q2PPJ7 1873 aa10.96□□□□□ -0.66
NPHP4-204ENST00000460696 AGAP5A6NIR3 686 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms