RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 WDR4P57081 412 aaKnown RBP17.13■□□□□ 0.33
USP39-209ENST00000458268 ZNHIT3Q15649 155 aaPredicted RBP17.13■□□□□ 0.33
USP39-209ENST00000458268 TBCELQ5QJ74 424 aa17.13■□□□□ 0.33
USP39-209ENST00000458268 ZNF585AQ6P3V2 769 aa17.13■□□□□ 0.33
USP39-209ENST00000458268 LARP4Q71RC2 724 aaKnown RBP eCLIP17.13■□□□□ 0.33
USP39-209ENST00000458268 MAMDC2Q7Z304 686 aaPredicted RBP17.13■□□□□ 0.33
USP39-209ENST00000458268 NUP54Q7Z3B4 507 aa17.13■□□□□ 0.33
USP39-209ENST00000458268 R3HCC1LQ7Z5L2 792 aaKnown RBP17.13■□□□□ 0.33
USP39-209ENST00000458268 MRGPRGQ86SM5 289 aa17.13■□□□□ 0.33
USP39-209ENST00000458268 DOLPP1Q86YN1 238 aa17.13■□□□□ 0.33
USP39-209ENST00000458268 CHERPQ8IWX8 916 aaKnown RBP17.13■□□□□ 0.33
USP39-209ENST00000458268 KRTCAP2Q8N6L1 136 aa17.13■□□□□ 0.33
USP39-209ENST00000458268 OR4N2Q8NGD1 307 aa17.13■□□□□ 0.33
USP39-209ENST00000458268 ERP27Q96DN0 273 aa17.13■□□□□ 0.33
USP39-209ENST00000458268 ELP4Q96EB1 424 aa17.13■□□□□ 0.33
USP39-209ENST00000458268 ZBED6CLQ96FA7 236 aaPredicted RBP17.13■□□□□ 0.33
USP39-209ENST00000458268 COL21A1Q96P44 957 aa17.13■□□□□ 0.33
USP39-209ENST00000458268 PHF12Q96QT6 1004 aa17.13■□□□□ 0.33
USP39-209ENST00000458268 SORT1Q99523 831 aa17.13■□□□□ 0.33
USP39-209ENST00000458268 NUF2Q9BZD4 464 aa17.13■□□□□ 0.33
USP39-209ENST00000458268 ZNF703Q9H7S9 590 aaPredicted RBP17.13■□□□□ 0.33
USP39-209ENST00000458268 ZDHHC11Q9H8X9 412 aa17.13■□□□□ 0.33
USP39-209ENST00000458268 TAS2R7Q9NYW3 318 aa17.13■□□□□ 0.33
USP39-209ENST00000458268 MARCOQ9UEW3 520 aaPredicted RBP17.13■□□□□ 0.33
USP39-209ENST00000458268 ACAD8Q9UKU7 415 aa17.13■□□□□ 0.33
USP39-209ENST00000458268 MAPRE3Q9UPY8 281 aa17.13■□□□□ 0.33
USP39-209ENST00000458268 TRGV5A0A0B4J1U4 118 aa17.12■□□□□ 0.33
USP39-209ENST00000458268 PRAMEF25A6NGN4 478 aa17.12■□□□□ 0.33
USP39-209ENST00000458268 UPK1AO00322 258 aa17.12■□□□□ 0.33
USP39-209ENST00000458268 CT45A8P0DMV1 189 aa17.12■□□□□ 0.33
USP39-209ENST00000458268 CT45A9P0DMV2 189 aa17.12■□□□□ 0.33
USP39-209ENST00000458268 PRPS2P11908 318 aa17.12■□□□□ 0.33
USP39-209ENST00000458268 TCEA1P23193 301 aaKnown RBP17.12■□□□□ 0.33
USP39-209ENST00000458268 CT45A2Q5DJT8 189 aa17.12■□□□□ 0.33
USP39-209ENST00000458268 MTFR2Q6P444 385 aa17.12■□□□□ 0.33
USP39-209ENST00000458268 JADE3Q92613 823 aa17.12■□□□□ 0.33
USP39-209ENST00000458268 HGDQ93099 445 aa17.12■□□□□ 0.33
USP39-209ENST00000458268 ARL8AQ96BM9 186 aa17.12■□□□□ 0.33
USP39-209ENST00000458268 OTUB1Q96FW1 271 aaPredicted RBP17.12■□□□□ 0.33
USP39-209ENST00000458268 BTBD9Q96Q07 612 aa17.12■□□□□ 0.33
USP39-209ENST00000458268 ANGPTL4Q9BY76 406 aa17.12■□□□□ 0.33
USP39-209ENST00000458268 C19orf53Q9UNZ5 99 aaPredicted RBP17.12■□□□□ 0.33
USP39-209ENST00000458268 SNX8Q9Y5X2 465 aa17.12■□□□□ 0.33
USP39-209ENST00000458268 PCNX1Q96RV3 2341 aa17.12■□□□□ 0.33
USP39-209ENST00000458268 A0A087WV62 115 aa17.11■□□□□ 0.33
USP39-209ENST00000458268 C15orf38-AP3S2A0A0A6YYH1 394 aa17.11■□□□□ 0.33
USP39-209ENST00000458268 CFLARO15519 480 aa17.11■□□□□ 0.33
USP39-209ENST00000458268 SCO2O43819 266 aa17.11■□□□□ 0.33
USP39-209ENST00000458268 G6PDP11413 515 aa17.11■□□□□ 0.33
USP39-209ENST00000458268 NAGAP17050 411 aa17.11■□□□□ 0.33
USP39-209ENST00000458268 DDX5P17844 614 aaKnown RBP17.11■□□□□ 0.33
USP39-209ENST00000458268 MAD2L1Q13257 205 aaPredicted RBP17.11■□□□□ 0.33
USP39-209ENST00000458268 PGS1Q32NB8 556 aa17.11■□□□□ 0.33
USP39-209ENST00000458268 SPDYE7PQ495Y7 208 aa17.11■□□□□ 0.33
USP39-209ENST00000458268 CPTPQ5TA50 214 aa17.11■□□□□ 0.33
USP39-209ENST00000458268 Q6ZPB1 254 aaPredicted RBP17.11■□□□□ 0.33
USP39-209ENST00000458268 TRILQ7L0X0 811 aa17.11■□□□□ 0.33
USP39-209ENST00000458268 NUP43Q8NFH3 380 aa17.11■□□□□ 0.33
USP39-209ENST00000458268 SLC9A6Q92581 669 aa17.11■□□□□ 0.33
USP39-209ENST00000458268 TLCD1Q96CP7 247 aa17.11■□□□□ 0.33
USP39-209ENST00000458268 TMCO6Q96DC7 493 aa17.11■□□□□ 0.33
USP39-209ENST00000458268 GNRHR2Q96P88 292 aa17.11■□□□□ 0.33
USP39-209ENST00000458268 YIPF4Q9BSR8 244 aa17.11■□□□□ 0.33
USP39-209ENST00000458268 AKTIPQ9H8T0 292 aa17.11■□□□□ 0.33
USP39-209ENST00000458268 Q9N2J8 555 aa17.11■□□□□ 0.33
USP39-209ENST00000458268 PNPLA3Q9NST1 481 aa17.11■□□□□ 0.33
USP39-209ENST00000458268 ARGLU1Q9NWB6 273 aaPredicted RBP17.11■□□□□ 0.33
USP39-209ENST00000458268 MEMO1Q9Y316 297 aa17.11■□□□□ 0.33
USP39-209ENST00000458268 WIPF3A6NGB9 483 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 PRSS44E7EML9 344 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 PLOD2O00469 737 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 TO15178 435 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 ICOSLGO75144 302 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 TRIM3O75382 744 aaPredicted RBP17.1■□□□□ 0.33
USP39-209ENST00000458268 SLITRK5O94991 958 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 SNX4O95219 450 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 LAMP1P11279 417 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 SOAT1P35610 550 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 RPL3P39023 403 aaKnown RBP17.1■□□□□ 0.33
USP39-209ENST00000458268 SMSP52788 366 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 ADORA2A-AS1P86434 159 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 PDE7AQ13946 482 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 GALNT10Q86SR1 603 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 EID3Q8N140 333 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 OR2L13Q8N349 312 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 GOLGA6L1Q8N7Z2 621 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 OR1J4Q8NGS1 313 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 GPR151Q8TDV0 419 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 PIK3R3Q92569 461 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 MTERF3Q96E29 417 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 SECISBP2Q96T21 854 aaKnown RBP17.1■□□□□ 0.33
USP39-209ENST00000458268 SERHLQ9NQF3 203 aa17.1■□□□□ 0.33
USP39-209ENST00000458268 NOP53Q9NZM5 478 aaKnown RBP17.1■□□□□ 0.33
USP39-209ENST00000458268 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.1■□□□□ 0.33
USP39-209ENST00000458268 GOLGA8QA0A0J9YX86 632 aa17.09■□□□□ 0.33
USP39-209ENST00000458268 A0A1W2PRB8 838 aa17.09■□□□□ 0.33
USP39-209ENST00000458268 GOLGA8OA6NCC3 632 aa17.09■□□□□ 0.33
USP39-209ENST00000458268 ANKRD33BA6NCL7 494 aa17.09■□□□□ 0.33
USP39-209ENST00000458268 CYSRT1A8MQ03 144 aa17.09■□□□□ 0.33
USP39-209ENST00000458268 GOLGA8NF8WBI6 632 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms