RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 CFL2Q9Y281 166 aa12.05□□□□□ -0.48
VPS33A-202ENST00000451053 L3MBTL1Q9Y468 752 aa12.05□□□□□ -0.48
VPS33A-202ENST00000451053 TNRC6AQ8NDV7 1962 aaKnown RBP12.05□□□□□ -0.48
VPS33A-202ENST00000451053 TRBV5-3A0A0A0MS03 114 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 RNF103-CHMP3A0A140T963 221 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 GSC2O15499 205 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 KRT75O95678 551 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 CT45A8P0DMV1 189 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 CT45A9P0DMV2 189 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 UQCRC2P22695 453 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 PTPN6P29350 595 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 PPICP45877 212 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 CD97P48960 835 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 SSR4P51571 173 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 NR0B1P51843 470 aaKnown RBP12.04□□□□□ -0.48
VPS33A-202ENST00000451053 PSG6Q00889 435 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 LY6DQ14210 128 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 CAPRIN1Q14444 709 aaKnown RBP12.04□□□□□ -0.48
VPS33A-202ENST00000451053 RUNDC3AQ59EK9 446 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 CT45A2Q5DJT8 189 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 PIGGQ5H8A4 983 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 MFSD12Q6NUT3 480 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 IGFL2Q6UWQ7 119 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 C17orf47Q8NEP4 570 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 OR56A1Q8NGH5 318 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 TP53INP1Q96A56 240 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 OTUB1Q96FW1 271 aaPredicted RBP12.04□□□□□ -0.48
VPS33A-202ENST00000451053 C16orf58Q96GQ5 468 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 LCORQ96JN0 433 aaPredicted RBP12.04□□□□□ -0.48
VPS33A-202ENST00000451053 BTBD9Q96Q07 612 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 LMF1Q96S06 567 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 SLC35A5Q9BS91 424 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 YIPF4Q9BSR8 244 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 THTPAQ9BU02 230 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 CADM1Q9BY67 442 aaKnown RBP12.04□□□□□ -0.48
VPS33A-202ENST00000451053 EPS8L2Q9H6S3 715 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 ZNF71Q9NQZ8 489 aaPredicted RBP12.04□□□□□ -0.48
VPS33A-202ENST00000451053 GPATCH2Q9NW75 528 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 ANKRD10Q9NXR5 420 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 ADA2Q9NZK5 511 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 VAPAQ9P0L0 249 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 ABCD2Q9UBJ2 740 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 GPR55Q9Y2T6 319 aaPredicted RBP12.04□□□□□ -0.48
VPS33A-202ENST00000451053 YARS2Q9Y2Z4 477 aaKnown RBP12.04□□□□□ -0.48
VPS33A-202ENST00000451053 ZNF451Q9Y4E5 1061 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 PCDHB14Q9Y5E9 798 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 CSAG2Q9Y5P2 127 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 GMEB1Q9Y692 573 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.04□□□□□ -0.48
VPS33A-202ENST00000451053 CFAP47Q6ZTR5 3102 aa12.04□□□□□ -0.48
VPS33A-202ENST00000451053 FRG2CA6NGY1 282 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 CLIC1O00299 241 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 OR6B1O95007 311 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 HMGN2P05204 90 aaKnown RBP12.03□□□□□ -0.48
VPS33A-202ENST00000451053 ACP2P11117 423 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 HOXB9P17482 250 aaPredicted RBP12.03□□□□□ -0.48
VPS33A-202ENST00000451053 DRD5P21918 477 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 SLC6A2P23975 617 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 TRHRP34981 398 aaPredicted RBP12.03□□□□□ -0.48
VPS33A-202ENST00000451053 CHI3L1P36222 383 aaPredicted RBP12.03□□□□□ -0.48
VPS33A-202ENST00000451053 SOX3P41225 446 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 MAGEA8P43361 318 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 SLC7A2P52569 658 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 CASP9P55211 416 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 EEFSECP57772 596 aaKnown RBP12.03□□□□□ -0.48
VPS33A-202ENST00000451053 RPS26P62854 115 aaKnown RBP12.03□□□□□ -0.48
VPS33A-202ENST00000451053 TUBA3CQ13748 450 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 LASP1Q14847 261 aaKnown RBP12.03□□□□□ -0.48
VPS33A-202ENST00000451053 EXOSC6Q5RKV6 272 aaKnown RBP12.03□□□□□ -0.48
VPS33A-202ENST00000451053 SAXO2Q658L1 398 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 NANOGP8Q6NSW7 305 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 TUBA3EQ6PEY2 450 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 LYPD8Q6UX82 237 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 IGFL3Q6UXB1 125 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 ASB18Q6ZVZ8 466 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 C6orf120Q7Z4R8 191 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 SLC44A2Q8IWA5 706 aaPredicted RBP12.03□□□□□ -0.48
VPS33A-202ENST00000451053 PRR22Q8IZ63 422 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 OR4N2Q8NGD1 307 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 SLC22A8Q8TCC7 542 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 HOXB13Q92826 284 aaPredicted RBP12.03□□□□□ -0.48
VPS33A-202ENST00000451053 TMEM125Q96AQ2 219 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 CDRT15Q96T59 188 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 CPPED1Q9BRF8 314 aaPredicted RBP12.03□□□□□ -0.48
VPS33A-202ENST00000451053 SLC39A3Q9BRY0 314 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 LMF2Q9BU23 707 aaKnown RBP12.03□□□□□ -0.48
VPS33A-202ENST00000451053 THUMPD3Q9BV44 507 aaKnown RBP12.03□□□□□ -0.48
VPS33A-202ENST00000451053 SPATA9Q9BWV2 254 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 RNF32Q9H0A6 362 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 SERHL2Q9H4I8 314 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 NANOGQ9H9S0 305 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 SLC25A37Q9NYZ2 338 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 SLAMF8Q9P0V8 285 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 ABI3Q9P2A4 366 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 TMEM181Q9P2C4 612 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 PCDHGB7Q9Y5F8 929 aa12.03□□□□□ -0.48
VPS33A-202ENST00000451053 LAMA5O15230 3695 aa12.02□□□□□ -0.49
VPS33A-202ENST00000451053 ZZEF1O43149 2961 aa12.02□□□□□ -0.49
VPS33A-202ENST00000451053 CIB2O75838 187 aa12.02□□□□□ -0.49
VPS33A-202ENST00000451053 NQO1P15559 274 aaKnown RBP12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms