RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 LARP4Q71RC2 724 aaKnown RBP eCLIP12.06□□□□□ -0.48
HMGB3-204ENST00000448905 GCNT2Q8N0V5 402 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 LRRC75A-AS1Q8N1F1 130 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 MEIOBQ8N635 442 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 SLC35A4Q96G79 324 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 FAM111AQ96PZ2 611 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 PIP5K1AQ99755 562 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 BDH2Q9BUT1 245 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 MRPL46Q9H2W6 279 aaKnown RBP12.06□□□□□ -0.48
HMGB3-204ENST00000448905 ACSS3Q9H6R3 686 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 ELOVL5Q9NYP7 299 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 TAS2R9Q9NYW1 312 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 EHD3Q9NZN3 535 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 STOML1Q9UBI4 398 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 OR10H1Q9Y4A9 318 aa12.06□□□□□ -0.48
HMGB3-204ENST00000448905 NIPBLQ6KC79 2804 aaeCLIP12.06□□□□□ -0.48
HMGB3-204ENST00000448905 CCDC151A5D8V7 595 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 ULK1O75385 1050 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 HSD3B1P14060 373 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 PCSK2P16519 638 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 ZNF708P17019 499 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 TAC1P20366 129 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 HSD3B2P26439 372 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 DPP4P27487 766 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 SOX18P35713 384 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 CPOXP36551 454 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 MC3RP41968 323 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 KCNJ5P48544 419 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 CLK3P49761 638 aaKnown RBP12.05□□□□□ -0.48
HMGB3-204ENST00000448905 LHX2P50458 406 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 DSCR4P56555 118 aaPredicted RBP12.05□□□□□ -0.48
HMGB3-204ENST00000448905 TRAF3Q13114 568 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 FGFBP1Q14512 234 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 TRADDQ15628 312 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 TEX35Q5T0J7 233 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 DESI1Q6ICB0 168 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 OR5M10Q6IEU7 315 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 Q71RC1 249 aaPredicted RBP12.05□□□□□ -0.48
HMGB3-204ENST00000448905 PLD6Q8N2A8 252 aaKnown RBP12.05□□□□□ -0.48
HMGB3-204ENST00000448905 C1orf52Q8N6N3 182 aaKnown RBP12.05□□□□□ -0.48
HMGB3-204ENST00000448905 CNEP1R1Q8N9A8 125 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 OR4K17Q8NGC6 315 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 ZNF675Q8TD23 568 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 ZNF681Q96N22 645 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 NSUN5Q96P11 429 aaKnown RBP12.05□□□□□ -0.48
HMGB3-204ENST00000448905 MED18Q9BUE0 208 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 STMN4Q9H169 189 aaPredicted RBP12.05□□□□□ -0.48
HMGB3-204ENST00000448905 PTGES2Q9H7Z7 377 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 ZBTB26Q9HCK0 441 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 FARSBQ9NSD9 589 aaKnown RBP12.05□□□□□ -0.48
HMGB3-204ENST00000448905 SENP1Q9P0U3 644 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 TRPS1Q9UHF7 1281 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 WIF1Q9Y5W5 379 aa12.05□□□□□ -0.48
HMGB3-204ENST00000448905 A0A1W2PNV4 684 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 GNG14A0A1W2PPG7 69 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 SLC22A20A6NK97 555 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 C16orf97H3BN30 126 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 CTIFO43310 598 aaKnown RBP12.04□□□□□ -0.48
HMGB3-204ENST00000448905 ZIC3O60481 467 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 GRK2P25098 689 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 CD79BP40259 229 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 CDH13P55290 713 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 MRPS35P82673 323 aaKnown RBP12.04□□□□□ -0.48
HMGB3-204ENST00000448905 FAM27E3Q08E93 113 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 GALNT1Q10472 559 aaPredicted RBP12.04□□□□□ -0.48
HMGB3-204ENST00000448905 ACKR1Q16570 336 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 PRSS57Q6UWY2 283 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 SLC44A2Q8IWA5 706 aaPredicted RBP12.04□□□□□ -0.48
HMGB3-204ENST00000448905 NUDT8Q8WV74 236 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 CNRIP1Q96F85 164 aaPredicted RBP12.04□□□□□ -0.48
HMGB3-204ENST00000448905 PGM2Q96G03 612 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 WFIKKN1Q96NZ8 548 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 BTBD9Q96Q07 612 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 SMR3AQ99954 134 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 SHCBP1LQ9BZQ2 653 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 CLCF1Q9UBD9 225 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 XPR1Q9UBH6 696 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 MCM8Q9UJA3 840 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 FBXL2Q9UKC9 423 aa12.04□□□□□ -0.48
HMGB3-204ENST00000448905 MRTO4Q9UKD2 239 aaKnown RBP12.04□□□□□ -0.48
HMGB3-204ENST00000448905 MAP1AP78559 2803 aaPredicted RBP12.04□□□□□ -0.48
HMGB3-204ENST00000448905 NCKAP5O14513 1909 aa12.03□□□□□ -0.48
HMGB3-204ENST00000448905 NAV3Q8IVL0 2385 aa12.03□□□□□ -0.48
HMGB3-204ENST00000448905 UQCRHLA0A096LP55 91 aa12.03□□□□□ -0.48
HMGB3-204ENST00000448905 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.03□□□□□ -0.48
HMGB3-204ENST00000448905 TNFRSF21O75509 655 aa12.03□□□□□ -0.48
HMGB3-204ENST00000448905 TNFSF13O75888 250 aa12.03□□□□□ -0.48
HMGB3-204ENST00000448905 TGM6O95932 706 aa12.03□□□□□ -0.48
HMGB3-204ENST00000448905 HEXAP06865 529 aa12.03□□□□□ -0.48
HMGB3-204ENST00000448905 CT45A8P0DMV1 189 aa12.03□□□□□ -0.48
HMGB3-204ENST00000448905 CT45A9P0DMV2 189 aa12.03□□□□□ -0.48
HMGB3-204ENST00000448905 HSD17B3P37058 310 aa12.03□□□□□ -0.48
HMGB3-204ENST00000448905 GSTM5P46439 218 aa12.03□□□□□ -0.48
HMGB3-204ENST00000448905 CLDN18P56856 261 aa12.03□□□□□ -0.48
HMGB3-204ENST00000448905 SLC7A5Q01650 507 aa12.03□□□□□ -0.48
HMGB3-204ENST00000448905 CLCQ05315 142 aa12.03□□□□□ -0.48
HMGB3-204ENST00000448905 CSTF3Q12996 717 aaKnown RBP12.03□□□□□ -0.48
HMGB3-204ENST00000448905 RASA2Q15283 850 aa12.03□□□□□ -0.48
HMGB3-204ENST00000448905 LTB4RQ15722 352 aa12.03□□□□□ -0.48
HMGB3-204ENST00000448905 CT45A2Q5DJT8 189 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms