RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 IST1P53990 364 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 NAGLUP54802 743 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 PSMD4P55036 377 aaKnown RBP6.45□□□□□ -1.38
VPS41-208ENST00000448833 CDH13P55290 713 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 MGAT2Q10469 447 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 GALNT1Q10472 559 aaPredicted RBP6.45□□□□□ -1.38
VPS41-208ENST00000448833 LCP2Q13094 533 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 FGFBP1Q14512 234 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 GANABQ14697 944 aaKnown RBP6.45□□□□□ -1.38
VPS41-208ENST00000448833 ZNHIT3Q15649 155 aaPredicted RBP6.45□□□□□ -1.38
VPS41-208ENST00000448833 WIPI1Q5MNZ9 446 aaPredicted RBP6.45□□□□□ -1.38
VPS41-208ENST00000448833 ZNF678Q5SXM1 525 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 FNDC7Q5VTL7 733 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 LETMD1Q6P1Q0 360 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 GALNT18Q6P9A2 607 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 TMEM64Q6YI46 380 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 PLCZ1Q86YW0 608 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 CCDC116Q8IYX3 515 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 CEP112Q8N8E3 955 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 CDYL2Q8N8U2 506 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 ADCY4Q8NFM4 1077 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 TNIP2Q8NFZ5 429 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 OR52R1Q8NGF1 315 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 FAM76AQ8TAV0 307 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 DOK4Q8TEW6 326 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 ZNF592Q92610 1267 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 MBD6Q96DN6 1003 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 L3HYPDHQ96EM0 354 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 CNRIP1Q96F85 164 aaPredicted RBP6.45□□□□□ -1.38
VPS41-208ENST00000448833 SLC35A4Q96G79 324 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 POM121Q96HA1 1249 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 C16orf45Q96MC5 204 aaPredicted RBP6.45□□□□□ -1.38
VPS41-208ENST00000448833 ZNF681Q96N22 645 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 DACH2Q96NX9 599 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 NSUN5Q96P11 429 aaKnown RBP6.45□□□□□ -1.38
VPS41-208ENST00000448833 BTBD9Q96Q07 612 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 ALPK1Q96QP1 1244 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 BBS4Q96RK4 519 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 SH3GL2Q99962 352 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 ITPAQ9BY32 194 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 UGT2B28Q9BY64 529 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 OR2B2Q9GZK3 357 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 CXXC4Q9H2H0 198 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 PTGES2Q9H7Z7 377 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 PPCSQ9HAB8 311 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 C3orf14Q9HBI5 128 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 SLC35C2Q9NQQ7 365 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 FARSBQ9NSD9 589 aaKnown RBP6.45□□□□□ -1.38
VPS41-208ENST00000448833 ZNF358Q9NW07 568 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 SIRT5Q9NXA8 310 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 TAS2R10Q9NYW0 307 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 CRIM1Q9NZV1 1036 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 DMGDHQ9UI17 866 aaKnown RBP6.45□□□□□ -1.38
VPS41-208ENST00000448833 DLGAP4Q9Y2H0 992 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 PLLPQ9Y342 182 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 OR10H1Q9Y4A9 318 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 ANKHD1Q8IWZ3 2542 aaKnown RBP6.45□□□□□ -1.38
VPS41-208ENST00000448833 C2CD3Q4AC94 2353 aa6.45□□□□□ -1.38
VPS41-208ENST00000448833 NIPBLQ6KC79 2804 aaeCLIP6.44□□□□□ -1.38
VPS41-208ENST00000448833 A0A087WV62 115 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 EEF1E1-BLOC1S5C9J1V9 151 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 EEF1E1O43324 174 aaKnown RBP6.44□□□□□ -1.38
VPS41-208ENST00000448833 UGT2B11O75310 529 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 CRCPO75575 148 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 LRATO95237 230 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 CBX7O95931 251 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 ANXA4P09525 319 aaPredicted RBP6.44□□□□□ -1.38
VPS41-208ENST00000448833 IFI6P09912 130 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 FOSL1P15407 271 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 CPA2P48052 419 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 CCT5P48643 541 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 ZNF136P52737 540 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 PRKAA2P54646 552 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 HMGCS1Q01581 520 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 OCRLQ01968 901 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 ZNF763Q0D2J5 394 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 EXOSC7Q15024 291 aaKnown RBP6.44□□□□□ -1.38
VPS41-208ENST00000448833 CEBPEQ15744 281 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 IMPG1Q17R60 797 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 CYP27C1Q4G0S4 372 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 TRMT12Q53H54 448 aaKnown RBP6.44□□□□□ -1.38
VPS41-208ENST00000448833 EIPR1Q53HC9 387 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 ZNF628Q5EBL2 1059 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 SPDYAQ5MJ70 313 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 BICRALQ6AI39 1079 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 FAM111BQ6SJ93 734 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 SEM1Q6ZVN7 128 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 LARP4Q71RC2 724 aaKnown RBP eCLIP6.44□□□□□ -1.38
VPS41-208ENST00000448833 YRDCQ86U90 279 aaKnown RBP6.44□□□□□ -1.38
VPS41-208ENST00000448833 CDC20BQ86Y33 519 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 TGIF2LYQ8IUE0 185 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 TRIM42Q8IWZ5 723 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 PRR22Q8IZ63 422 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 FAM9CQ8IZT9 166 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 TMEM151AQ8N4L1 468 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 RELL2Q8NC24 303 aaPredicted RBP6.44□□□□□ -1.38
VPS41-208ENST00000448833 KIF18AQ8NI77 898 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 HGDQ93099 445 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 TMBIM1Q969X1 311 aa6.44□□□□□ -1.38
VPS41-208ENST00000448833 ADOQ96SZ5 270 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms