RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 FBXL2Q9UKC9 423 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 EXO1Q9UQ84 846 aaKnown RBP13.19□□□□□ -0.3
SDC1-204ENST00000429035 DLGAP4Q9Y2H0 992 aa13.19□□□□□ -0.3
SDC1-204ENST00000429035 EXOC1LA0A1B0GW35 172 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 SH3D21A4FU49 640 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 OR6C70A6NIJ9 312 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 PLOD2O00469 737 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 SCO2O43819 266 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 SMNDC1O75940 238 aaKnown RBP eCLIP13.18□□□□□ -0.3
SDC1-204ENST00000429035 SRD5A2P31213 254 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 PPICP45877 212 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 HTR6P50406 440 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 TRA2BP62995 288 aaKnown RBP13.18□□□□□ -0.3
SDC1-204ENST00000429035 HMGCS1Q01581 520 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 BTKQ06187 659 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 CSTF3Q12996 717 aaKnown RBP13.18□□□□□ -0.3
SDC1-204ENST00000429035 DAZAP2Q15038 168 aaPredicted RBP13.18□□□□□ -0.3
SDC1-204ENST00000429035 RASA2Q15283 850 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 DEFB113Q30KQ7 82 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 ZNF628Q5EBL2 1059 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 AAGABQ6PD74 315 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 GPRIN3Q6ZVF9 776 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 LARP4Q71RC2 724 aaKnown RBP eCLIP13.18□□□□□ -0.3
SDC1-204ENST00000429035 CAMKMTQ7Z624 323 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 PLCZ1Q86YW0 608 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 UBQLNLQ8IYU4 475 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 FAM9CQ8IZT9 166 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 WDSUB1Q8N9V3 476 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 ZNF592Q92610 1267 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 EFHD2Q96C19 240 aaPredicted RBP13.18□□□□□ -0.3
SDC1-204ENST00000429035 ZNF681Q96N22 645 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 TMEM237Q96Q45 408 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 TM9SF2Q99805 663 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 FOLH1BQ9HBA9 442 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 MCM8Q9UJA3 840 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 ZNF225Q9UK10 706 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 OR10H1Q9Y4A9 318 aa13.18□□□□□ -0.3
SDC1-204ENST00000429035 A0A087WUV0 522 aaPredicted RBP13.17□□□□□ -0.3
SDC1-204ENST00000429035 C17orf51A8MQB3 221 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 ABCB7O75027 752 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 BCAS2O75934 225 aaPredicted RBP13.17□□□□□ -0.3
SDC1-204ENST00000429035 ATE1O95260 518 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 SNRPAP09012 282 aaKnown RBP13.17□□□□□ -0.3
SDC1-204ENST00000429035 SBK3P0C264 359 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 HSD3B1P14060 373 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 DRD2P14416 443 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 CPN1P15169 458 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 DRD5P21918 477 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 GRK2P25098 689 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 HSD3B2P26439 372 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 HSD17B3P37058 310 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 DIO3P55073 304 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 ADAM8P78325 824 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 ACSM2AQ08AH3 577 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 STX5Q13190 355 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 EFR3AQ14156 821 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 WHAMMP3Q1A5X7 153 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 ACSM2BQ68CK6 577 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 SCIMPQ6UWF3 145 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 NPSR1Q6W5P4 371 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 CHMP1BQ7LBR1 199 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 SLC44A2Q8IWA5 706 aaPredicted RBP13.17□□□□□ -0.3
SDC1-204ENST00000429035 CNEP1R1Q8N9A8 125 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 METTL6Q8TCB7 284 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 ZNF675Q8TD23 568 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 CTHRC1Q96CG8 243 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 MTBPQ96DY7 904 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 APIPQ96GX9 242 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 ZFP3Q96NJ6 502 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 BTBD9Q96Q07 612 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 BBS4Q96RK4 519 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 FUT8Q9BYC5 575 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 ACPTQ9BZG2 426 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 ACBD3Q9H3P7 528 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 PPP4R1LQ9P1A2 415 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 CLCF1Q9UBD9 225 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 FETUBQ9UGM5 382 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 DMGDHQ9UI17 866 aaKnown RBP13.17□□□□□ -0.3
SDC1-204ENST00000429035 ZNF180Q9UJW8 692 aa13.17□□□□□ -0.3
SDC1-204ENST00000429035 GPR55Q9Y2T6 319 aaPredicted RBP13.17□□□□□ -0.3
SDC1-204ENST00000429035 CASKO14936 926 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 TO15178 435 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 RCBTB2O95199 551 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 HRGP04196 525 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 DPP4P27487 766 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 TIA1P31483 386 aaKnown RBP eCLIP13.16□□□□□ -0.3
SDC1-204ENST00000429035 RFX3P48380 749 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 LHX2P50458 406 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 SIRPAP78324 504 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 HEPACAMQ14CZ8 416 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 UNC50Q53HI1 259 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 SPIN4Q56A73 249 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 ZNF678Q5SXM1 525 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 RAET1LQ5VY80 246 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 RELL1Q8IUW5 271 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 NOA1Q8NC60 698 aaKnown RBP13.16□□□□□ -0.3
SDC1-204ENST00000429035 WFDC11Q8NEX6 87 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 C16orf78Q8WTQ4 265 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 WNT2BQ93097 391 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 MBD6Q96DN6 1003 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms