RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 FBXW5Q969U6 566 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 KAZALD1Q96I82 304 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 PWWP2AQ96N64 755 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 ZBTB20Q9HC78 741 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-204ENST00000423058 PIGVQ9NUD9 493 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 DNAJC27Q9NZQ0 273 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 RNF6Q9Y252 685 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF142P52746 1687 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-204ENST00000423058 A0A0U1RQJ8 604 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 FAM230AA0A1W2PPH8 454 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF860A6NHJ4 632 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 SOBPA7XYQ1 873 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 J3QRK9 145 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 ACVRL1P37023 503 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 SOX2P48431 317 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 SLC9A3P48764 834 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 PAFAH1B3Q15102 231 aaKnown RBP6.53□□□□□ -1.36
SCN1A-204ENST00000423058 FBXO46Q6PJ61 603 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-204ENST00000423058 NAPRTQ6XQN6 538 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 NLGN4YQ8NFZ3 816 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-204ENST00000423058 BOD1Q96IK1 185 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 SLC2A13Q96QE2 648 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 COQ3Q9NZJ6 369 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 MYOTQ9UBF9 498 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 PTBP2Q9UKA9 531 aaKnown RBP6.53□□□□□ -1.36
SCN1A-204ENST00000423058 EMC9Q9Y3B6 208 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 ATG2BQ96BY7 2078 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 TRAV6A0A075B6T7 132 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 A0A0A6YYH2 397 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 A6NJ64 397 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 FMO6PO60774 539 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 KITLGP21583 273 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 LMAN2Q12907 356 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 LRRC37A5PQ49AS3 106 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 SH3D19Q5HYK7 790 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 SLC22A10Q63ZE4 541 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 SKA3Q8IX90 412 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 CMIPQ8IY22 773 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 OR8J3Q8NGG0 315 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 OR51Q1Q8NH59 317 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 CLEC4DQ8WXI8 215 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 PTERQ96BW5 349 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 ZNF382Q96SR6 550 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 CHRDQ9H2X0 955 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 MTHFD2LQ9H903 347 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-204ENST00000423058 CREBZFQ9NS37 354 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 CACNA1CQ13936 2221 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 NSG1A0A0A6YYJ2 146 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 COCHO43405 550 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 OR8U9P0C7N5 309 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 SNHG28P0DPA3 235 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 TIA1P31483 386 aaKnown RBP eCLIP6.53□□□□□ -1.36
SCN1A-204ENST00000423058 CHRNA4P43681 627 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 ATP4BP51164 291 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 TBPL1P62380 186 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 BPHLQ86WA6 291 aaPredicted RBP6.53□□□□□ -1.36
SCN1A-204ENST00000423058 LRRC57Q8N9N7 239 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 CLEC4CQ8WTT0 213 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 ATF6BQ99941 703 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 MICU1Q9BPX6 476 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 TOR3AQ9H497 397 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 OBP2BQ9NPH6 170 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 PXDNQ92626 1479 aa6.53□□□□□ -1.36
SCN1A-204ENST00000423058 A8MT66 165 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 SULT2B1O00204 365 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 CRTAPO75718 401 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-204ENST00000423058 WNT11O96014 354 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 F2RP25116 425 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 PTGER4P35408 488 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 ETV3P41162 512 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 GABRA2P47869 451 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 LBX1P52954 281 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 NKPD1Q17RQ9 610 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 ZBED5Q49AG3 693 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 ATG9BQ674R7 924 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 NCBP2-AS2Q69YL0 99 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 GRAMD2AQ8IUY3 354 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 BANPQ8N9N5 519 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 OR5AK2Q8NH90 309 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 C16orf78Q8WTQ4 265 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 CNOT9Q92600 299 aaKnown RBP6.52□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF317Q96PQ6 595 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-204ENST00000423058 MYADMQ96S97 322 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 DPH7Q9BTV6 452 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 RBMX2Q9Y388 322 aaKnown RBP6.52□□□□□ -1.37
SCN1A-204ENST00000423058 ZNF891A8MT65 544 aaPredicted RBP6.52□□□□□ -1.37
SCN1A-204ENST00000423058 B4DXG7 233 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 JRKO75564 520 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 S1PR4O95977 384 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 TIMP1P01033 207 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 CD53P19397 219 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 AOC1P19801 751 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 SLC2A5P22732 501 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 PEX2P28328 305 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 SFTPDP35247 375 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 EFNA3P52797 238 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 RAB11AP62491 216 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 CDONQ4KMG0 1287 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 SLC43A2Q8N370 569 aa6.52□□□□□ -1.37
SCN1A-204ENST00000423058 C2CD4AQ8NCU7 369 aaPredicted RBP6.52□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms