RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 BCAS2O75934 225 aaPredicted RBP17.41■□□□□ 0.38
SF3A1-202ENST00000411423 SNX4O95219 450 aa17.41■□□□□ 0.38
SF3A1-202ENST00000411423 ACVR2AP27037 513 aa17.41■□□□□ 0.38
SF3A1-202ENST00000411423 CDK9P50750 372 aaKnown RBP17.41■□□□□ 0.38
SF3A1-202ENST00000411423 GALNTL6Q49A17 601 aa17.41■□□□□ 0.38
SF3A1-202ENST00000411423 EIPR1Q53HC9 387 aa17.41■□□□□ 0.38
SF3A1-202ENST00000411423 XKR7Q5GH72 579 aa17.41■□□□□ 0.38
SF3A1-202ENST00000411423 SLC44A2Q8IWA5 706 aaPredicted RBP17.41■□□□□ 0.38
SF3A1-202ENST00000411423 DDIASQ8IXT1 998 aa17.41■□□□□ 0.38
SF3A1-202ENST00000411423 RNF138Q8WVD3 245 aa17.41■□□□□ 0.38
SF3A1-202ENST00000411423 ELP4Q96EB1 424 aa17.41■□□□□ 0.38
SF3A1-202ENST00000411423 SLC35A4Q96G79 324 aa17.41■□□□□ 0.38
SF3A1-202ENST00000411423 ADOQ96SZ5 270 aa17.41■□□□□ 0.38
SF3A1-202ENST00000411423 CCT7Q99832 543 aa17.41■□□□□ 0.38
SF3A1-202ENST00000411423 TTYH2Q9BSA4 534 aa17.41■□□□□ 0.38
SF3A1-202ENST00000411423 OSBPL11Q9BXB4 747 aa17.41■□□□□ 0.38
SF3A1-202ENST00000411423 EXO5Q9H790 373 aa17.41■□□□□ 0.38
SF3A1-202ENST00000411423 METTL7AQ9H8H3 244 aa17.41■□□□□ 0.38
SF3A1-202ENST00000411423 C19orf53Q9UNZ5 99 aaPredicted RBP17.41■□□□□ 0.38
SF3A1-202ENST00000411423 WBP11Q9Y2W2 641 aaKnown RBP17.41■□□□□ 0.38
SF3A1-202ENST00000411423 SLC6A5Q9Y345 797 aa17.41■□□□□ 0.38
SF3A1-202ENST00000411423 PHF3Q92576 2039 aaKnown RBP17.41■□□□□ 0.38
SF3A1-202ENST00000411423 A0A087WV62 115 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 WDR91A4D1P6 747 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 OR6C70A6NIJ9 312 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 HNRNPRO43390 633 aaKnown RBP17.4■□□□□ 0.38
SF3A1-202ENST00000411423 REM1O75628 298 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 HPNP05981 417 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 GLI4P10075 376 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 NEFHP12036 1026 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 ADH7P40394 386 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 CRYZQ08257 329 aaKnown RBP17.4■□□□□ 0.38
SF3A1-202ENST00000411423 PDE7AQ13946 482 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 DCST1Q5T197 706 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 TIGD3Q6B0B8 471 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 ANGPTL8Q6UXH0 198 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 SEM1Q6ZVN7 128 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 OR2L13Q8N349 312 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 WDSUB1Q8N9V3 476 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 EFHD2Q96C19 240 aaPredicted RBP17.4■□□□□ 0.38
SF3A1-202ENST00000411423 COL21A1Q96P44 957 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 UCK2Q9BZX2 261 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 C20orf27Q9GZN8 174 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 FLRT3Q9NZU0 649 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 ACAD8Q9UKU7 415 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 MAPRE3Q9UPY8 281 aa17.4■□□□□ 0.38
SF3A1-202ENST00000411423 DCHS2Q6V1P9 2916 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 CACNA1CQ13936 2221 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 NKX2-6A6NCS4 301 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 PRAMEF25A6NGN4 478 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 SNPHO15079 494 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 RGS16O15492 202 aaPredicted RBP17.39■□□□□ 0.37
SF3A1-202ENST00000411423 SKAP2O75563 359 aaPredicted RBP17.39■□□□□ 0.37
SF3A1-202ENST00000411423 TRAPPC6AO75865 159 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 BCKDHAP12694 445 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 EFNA1P20827 205 aaPredicted RBP17.39■□□□□ 0.37
SF3A1-202ENST00000411423 NTSP30990 170 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 SERPINB4P48594 390 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 MASP1P48740 699 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 GAS1P54826 345 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 ZNF155Q12901 538 aaPredicted RBP17.39■□□□□ 0.37
SF3A1-202ENST00000411423 WIPI1Q5MNZ9 446 aaPredicted RBP17.39■□□□□ 0.37
SF3A1-202ENST00000411423 CEP85LQ5SZL2 805 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 TMEM211Q6ICI0 200 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 PACS2Q86VP3 889 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 SARAFQ96BY9 339 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 RTN4RQ9BZR6 473 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 STMN4Q9H169 189 aaPredicted RBP17.39■□□□□ 0.37
SF3A1-202ENST00000411423 REEP4Q9H6H4 257 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 TAS2R9Q9NYW1 312 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 SENP1Q9P0U3 644 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 B4GALT7Q9UBV7 327 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 KIAA1549Q9HCM3 1950 aa17.39■□□□□ 0.37
SF3A1-202ENST00000411423 CTIFO43310 598 aaKnown RBP17.38■□□□□ 0.37
SF3A1-202ENST00000411423 TBX19O60806 448 aa17.38■□□□□ 0.37
SF3A1-202ENST00000411423 PEX11AO75192 247 aa17.38■□□□□ 0.37
SF3A1-202ENST00000411423 CHEK2O96017 543 aa17.38■□□□□ 0.37
SF3A1-202ENST00000411423 DHRS4L1P0CG22 281 aa17.38■□□□□ 0.37
SF3A1-202ENST00000411423 FRKP42685 505 aaPredicted RBP17.38■□□□□ 0.37
SF3A1-202ENST00000411423 WNT3P56703 355 aa17.38■□□□□ 0.37
SF3A1-202ENST00000411423 RPP38P78345 283 aaKnown RBP17.38■□□□□ 0.37
SF3A1-202ENST00000411423 TFF3Q07654 80 aa17.38■□□□□ 0.37
SF3A1-202ENST00000411423 HSPB3Q12988 150 aa17.38■□□□□ 0.37
SF3A1-202ENST00000411423 GAB1Q13480 694 aa17.38■□□□□ 0.37
SF3A1-202ENST00000411423 C1orf185Q5T7R7 199 aa17.38■□□□□ 0.37
SF3A1-202ENST00000411423 WLSQ5T9L3 541 aa17.38■□□□□ 0.37
SF3A1-202ENST00000411423 SLC30A6Q6NXT4 461 aa17.38■□□□□ 0.37
SF3A1-202ENST00000411423 LARP4Q71RC2 724 aaKnown RBP eCLIP17.38■□□□□ 0.37
SF3A1-202ENST00000411423 YRDCQ86U90 279 aaKnown RBP17.38■□□□□ 0.37
SF3A1-202ENST00000411423 LIX1LQ8IVB5 337 aa17.38■□□□□ 0.37
SF3A1-202ENST00000411423 ULK2Q8IYT8 1036 aa17.38■□□□□ 0.37
SF3A1-202ENST00000411423 EID3Q8N140 333 aa17.38■□□□□ 0.37
SF3A1-202ENST00000411423 ACBD4Q8NC06 268 aa17.38■□□□□ 0.37
SF3A1-202ENST00000411423 FAM83FQ8NEG4 500 aaPredicted RBP17.38■□□□□ 0.37
SF3A1-202ENST00000411423 OR1J4Q8NGS1 313 aa17.38■□□□□ 0.37
SF3A1-202ENST00000411423 CA5BP1Q8WTZ4 195 aa17.38■□□□□ 0.37
SF3A1-202ENST00000411423 RND1Q92730 232 aa17.38■□□□□ 0.37
SF3A1-202ENST00000411423 ZNF764Q96H86 408 aaPredicted RBP17.38■□□□□ 0.37
SF3A1-202ENST00000411423 TIMP4Q99727 224 aa17.38■□□□□ 0.37
SF3A1-202ENST00000411423 EML4Q9HC35 981 aaKnown RBP17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms