RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 SOX10P56693 466 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 SP3Q02447 781 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 LDB1Q86U70 411 aaPredicted RBP12.81□□□□□ -0.36
USP49-203ENST00000394253 ZNF440Q8IYI8 595 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 OR4M1Q8NGD0 313 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 OR2M2Q96R28 347 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 ZNF587Q96SQ5 575 aaPredicted RBP12.81□□□□□ -0.36
USP49-203ENST00000394253 TTPALQ9BTX7 342 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 SEMA4CQ9C0C4 833 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 LYRM2Q9NU23 88 aaPredicted RBP12.81□□□□□ -0.36
USP49-203ENST00000394253 DCAF16Q9NXF7 216 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 NDUFV2P19404 249 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 ACVR1BP36896 505 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 CNIH2Q6PI25 160 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 LRFN4Q6PJG9 635 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 EPGNQ6UW88 154 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 TSPYL5Q86VY4 417 aaPredicted RBP12.81□□□□□ -0.36
USP49-203ENST00000394253 KCNRGQ8N5I3 272 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 OR5M3Q8NGP4 307 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 OR8U1Q8NH10 309 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 OR5AK2Q8NH90 309 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 CMTM2Q8TAZ6 248 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 ACDQ96AP0 544 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 SLC45A3Q96JT2 553 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 SOX17Q9H6I2 414 aaPredicted RBP12.81□□□□□ -0.36
USP49-203ENST00000394253 CDH20Q9HBT6 801 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 FAM185AQ8N0U4 392 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 ALG3Q92685 438 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 C1orf123Q9NWV4 160 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 GAR1Q9NY12 217 aaKnown RBP12.81□□□□□ -0.36
USP49-203ENST00000394253 GABARAPH6UMI1 98 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 GABARAPO95166 117 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 SPP1P10451 314 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 LAP3P28838 519 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 F2RL1P55085 397 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 MAP2K5Q13163 448 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 B3GNT7Q8NFL0 401 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 BPIFA2Q96DR5 249 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 NKX1-2Q9UD57 310 aaPredicted RBP12.81□□□□□ -0.36
USP49-203ENST00000394253 DPM1O60762 260 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 OLFM2O95897 454 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 POU4F3Q15319 338 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 SIMC1Q8NDZ2 872 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 ZNF461Q8TAF7 563 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 NUS1Q96E22 293 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 UBL7Q96S82 380 aaPredicted RBP12.81□□□□□ -0.36
USP49-203ENST00000394253 HDHD5Q9BXW7 423 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 CEPT1Q9Y6K0 416 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 SETBP1Q9Y6X0 1596 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 RAB3DO95716 219 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 HADHBP55084 474 aaKnown RBP12.81□□□□□ -0.36
USP49-203ENST00000394253 OTOP3Q7RTS5 596 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 LIN28AQ9H9Z2 209 aaKnown RBP12.81□□□□□ -0.36
USP49-203ENST00000394253 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 KIAA1324LA8MWY0 1029 aaPredicted RBP12.81□□□□□ -0.36
USP49-203ENST00000394253 TNFSF12O43508 249 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 MFGE8Q08431 387 aaPredicted RBP12.81□□□□□ -0.36
USP49-203ENST00000394253 ZNF704Q6ZNC4 412 aaPredicted RBP12.81□□□□□ -0.36
USP49-203ENST00000394253 LINC01599Q8WXQ3 324 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 CWH43Q9H720 699 aa12.81□□□□□ -0.36
USP49-203ENST00000394253 FAM237AA0A1B0GTK4 181 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 B4GAT1O43505 415 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 TLL1O43897 1013 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 EIF4EP06730 217 aaKnown RBP12.8□□□□□ -0.36
USP49-203ENST00000394253 CASP6P55212 293 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 H3F3AP84243 136 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 LRRC32Q14392 662 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 LRRC28Q86X40 367 aaPredicted RBP12.8□□□□□ -0.36
USP49-203ENST00000394253 ARNTL2Q8WYA1 636 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 CRB3Q9BUF7 120 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 DENRO43583 198 aaKnown RBP12.8□□□□□ -0.36
USP49-203ENST00000394253 OPN1SWP03999 348 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 TAGLN2P37802 199 aaKnown RBP12.8□□□□□ -0.36
USP49-203ENST00000394253 PSMB3P49720 205 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 NPRL3Q12980 569 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 TARBP2Q15633 366 aaKnown RBP12.8□□□□□ -0.36
USP49-203ENST00000394253 Q1RN00 199 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 KLBQ86Z14 1044 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 KDM1BQ8NB78 822 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 BBS10Q8TAM1 723 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 TRMT2BQ96GJ1 504 aaKnown RBP12.8□□□□□ -0.36
USP49-203ENST00000394253 COQ4Q9Y3A0 265 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 TYRP14679 529 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 ITGB5P18084 799 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 HOXD11P31277 338 aaPredicted RBP12.8□□□□□ -0.36
USP49-203ENST00000394253 ADRA1BP35368 520 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 GHRHRQ02643 423 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 ACTBL2Q562R1 376 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 SLC22A11Q9NSA0 550 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 KDELR3O43731 214 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 OR2C1O95371 312 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 OAS1P00973 400 aaKnown RBP12.8□□□□□ -0.36
USP49-203ENST00000394253 GCGRP47871 477 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 ZNF266Q14584 549 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 FBXO48Q5FWF7 155 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 ZNF783Q6ZMS7 281 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 RNF141Q8WVD5 230 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 GLUD1P00367 558 aa12.8□□□□□ -0.36
USP49-203ENST00000394253 TRHRP34981 398 aaPredicted RBP12.8□□□□□ -0.36
USP49-203ENST00000394253 STK19P49842 368 aaPredicted RBP12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms