RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 RRNAD1Q96FB5 475 aaKnown RBP13.02□□□□□ -0.32
COL4A1-201ENST00000375820 ARHGAP39Q9C0H5 1083 aa13.02□□□□□ -0.32
COL4A1-201ENST00000375820 MMP28Q9H239 520 aa13.02□□□□□ -0.32
COL4A1-201ENST00000375820 NAALAD2Q9Y3Q0 740 aa13.02□□□□□ -0.32
COL4A1-201ENST00000375820 NFKBIEO00221 500 aa13.02□□□□□ -0.32
COL4A1-201ENST00000375820 NPPAP01160 153 aa13.02□□□□□ -0.32
COL4A1-201ENST00000375820 HTR2AP28223 471 aa13.02□□□□□ -0.32
COL4A1-201ENST00000375820 RORAP35398 523 aa13.02□□□□□ -0.32
COL4A1-201ENST00000375820 CDKN2CP42773 168 aa13.02□□□□□ -0.32
COL4A1-201ENST00000375820 PCGF3Q3KNV8 242 aa13.02□□□□□ -0.32
COL4A1-201ENST00000375820 OR5M10Q6IEU7 315 aa13.02□□□□□ -0.32
COL4A1-201ENST00000375820 TTC9BQ8N6N2 239 aa13.02□□□□□ -0.32
COL4A1-201ENST00000375820 SMIM3Q9BZL3 60 aa13.02□□□□□ -0.32
COL4A1-201ENST00000375820 AK6Q9Y3D8 172 aaKnown RBP13.02□□□□□ -0.32
COL4A1-201ENST00000375820 FER1L4A9Z1Z3 1794 aa13.02□□□□□ -0.32
COL4A1-201ENST00000375820 UBFD1O14562 309 aaKnown RBP13.02□□□□□ -0.33
COL4A1-201ENST00000375820 CREBL2O60519 120 aaPredicted RBP13.02□□□□□ -0.33
COL4A1-201ENST00000375820 TMEM11P17152 192 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 CNR2P34972 360 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 LTC4SQ16873 150 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 TMEM25Q86YD3 366 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 SOCS5O75159 536 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 STC2O76061 302 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 LAMP1P11279 417 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 BPIP17213 487 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 RHCEP18577 417 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 ACTC1P68032 377 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 ACTA1P68133 377 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 GBX1Q14549 363 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 CST6Q15828 149 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 FIGLAQ6QHK4 219 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 LIPIQ6XZB0 460 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 TAS1R3Q7RTX0 852 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 UEVLDQ8IX04 471 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 SDR9C7Q8NEX9 313 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 DCUN1D4Q92564 292 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 CDC6Q99741 560 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 TUBA1CQ9BQE3 449 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 ANKRD28O15084 1053 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 RAB3BP20337 219 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 ATP4BP51164 291 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 CCBE1Q6UXH8 406 aaPredicted RBP13.02□□□□□ -0.33
COL4A1-201ENST00000375820 TMIEQ8NEW7 156 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 OR5AR1Q8NGP9 310 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 ZNF689Q96CS4 500 aaPredicted RBP13.02□□□□□ -0.33
COL4A1-201ENST00000375820 NFS1Q9Y697 457 aa13.02□□□□□ -0.33
COL4A1-201ENST00000375820 MYADML2A6NDP7 307 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 A8MVJ9 347 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 EEDO75530 441 aaKnown RBP13.01□□□□□ -0.33
COL4A1-201ENST00000375820 PRMT2P55345 433 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 NR4A3Q92570 626 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 FUNDC2Q9BWH2 189 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 PPP1R14DQ9NXH3 145 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 KLHL21Q9UJP4 597 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 RARRES3Q9UL19 164 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 CAMTA1Q9Y6Y1 1673 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 SLC1A7O00341 560 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 POLR2HP52434 150 aaKnown RBP13.01□□□□□ -0.33
COL4A1-201ENST00000375820 NDUFAF5Q5TEU4 345 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.01□□□□□ -0.33
COL4A1-201ENST00000375820 SMOXQ9NWM0 555 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 ATPIF1Q9UII2 106 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 CSNK1G3Q9Y6M4 447 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 VEGFDO43915 354 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 LILRB5O75023 590 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 LDB3O75112 727 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 ZNF43P17038 809 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 ADH6P28332 368 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 ALDH3B1P43353 468 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 ACTA2P62736 377 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 ACTG2P63267 376 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 SH3BP2P78314 561 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 ZNF181Q2M3W8 571 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 TMEM173Q86WV6 379 aaPredicted RBP13.01□□□□□ -0.33
COL4A1-201ENST00000375820 TEX26Q8N6G2 289 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 ECHDC3Q96DC8 303 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 C12orf42Q96LP6 360 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 ZNF559Q9BR84 538 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 CPEB1Q9BZB8 566 aaKnown RBP13.01□□□□□ -0.33
COL4A1-201ENST00000375820 SPATA31D1Q6ZQQ2 1576 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 HHLA1C9JL84 531 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 TYROBPO43914 113 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 IFNA1P01562 189 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 RBMS1P29558 406 aaKnown RBP13.01□□□□□ -0.33
COL4A1-201ENST00000375820 GRIA2P42262 883 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 CLDN2P57739 230 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 GRM7Q14831 915 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 RNASE10Q5GAN6 216 aaKnown RBP13.01□□□□□ -0.33
COL4A1-201ENST00000375820 ARHGAP11AQ6P4F7 1023 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 GPR155Q7Z3F1 870 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 IL1F10Q8WWZ1 152 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 PHB2Q99623 299 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 AIG1Q9NVV5 245 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 FNIP2Q9P278 1114 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 RPH3ALQ9UNE2 315 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 OR52A4PA6NMU1 304 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 HTR6P50406 440 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 TLE3Q04726 772 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 ZNF674Q2M3X9 581 aa13.01□□□□□ -0.33
COL4A1-201ENST00000375820 C3orf38Q5JPI3 329 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms