RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 SHARPINQ9H0F6 387 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 CXorf36Q9H7Y0 433 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 ISG20L2Q9H9L3 353 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 TAS2R7Q9NYW3 318 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 PCDHB8Q9UN66 801 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 SIRT4Q9Y6E7 314 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 DOCK6Q96HP0 2047 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 CHD7Q9P2D1 2997 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 NDUFA2O43678 99 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 SH3BP5O60239 455 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 PLATP00750 562 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 ACP2P11117 423 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 SPAM1P38567 509 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 DGKGP49619 791 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 KCNA10Q16322 511 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 RNLSQ5VYX0 342 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 REEP3Q6NUK4 255 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 COMMD6Q7Z4G1 85 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 MRPL10Q7Z7H8 261 aaKnown RBP12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 LURAP1LQ8IV03 231 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 OR2T4Q8NH00 348 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 ZFPM2Q8WW38 1151 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 SFXN2Q96NB2 322 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 ABCG4Q9H172 646 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 SAV1Q9H4B6 383 aaPredicted RBP12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 IFT46Q9NQC8 304 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 SH2B3Q9UQQ2 575 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 HRH3Q9Y5N1 445 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 FKBP7Q9Y680 259 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 KIAA1671Q9BY89 1806 aa12.68□□□□□ -0.38
CCDC88C-201ENST00000331194 A0A1W2PRB8 838 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 OR2AG2A6NM03 316 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 C5orf58C9J3I9 102 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 KLHL18O94889 574 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 ALDOBP05062 364 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 OR56A5P0C7T3 313 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 PTGER1P34995 402 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 SLC1A3P43003 542 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 LIPJQ5W064 366 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 RASSF6Q6ZTQ3 369 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 NLRC3Q7RTR2 1065 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 PRSS45Q7RTY3 260 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 ZNF485Q8NCK3 441 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 BBS1Q8NFJ9 593 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 HMGB4Q8WW32 186 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 FGF11Q92914 225 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 TBX5Q99593 518 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 OSGEPL1Q9H4B0 414 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 RASD1Q9Y272 281 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 TMEM129A0AVI4 362 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 KLK1P06870 262 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 FURINP09958 794 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 HNMTP50135 292 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 TPMTP51580 245 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 ERVK-21P61565 698 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 TSPAN5P62079 268 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 DGCR2P98153 550 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 GSG1Q2KHT4 349 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 SPIN4Q56A73 249 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 CD276Q5ZPR3 534 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 ALKAL2Q6UX46 152 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 TMPRSS11BQ86T26 416 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 TMEM151BQ8IW70 566 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 OR4K5Q8NGD3 323 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 DMRTA2Q96SC8 542 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 SLC6A16Q9GZN6 736 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 SPRTNQ9H040 489 aaPredicted RBP12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 DPAGT1Q9H3H5 408 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 C11orf49Q9H6J7 331 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 PTGFRNQ9P2B2 879 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 CFAP97Q9P2B7 532 aa12.67□□□□□ -0.38
CCDC88C-201ENST00000331194 ARRDC5A6NEK1 342 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 GPR37L1O60883 481 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 VNN2O95498 520 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 LPLP06858 475 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 TBXA2RP21731 343 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 ATP5C1P36542 298 aaKnown RBP12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 IKZF1Q13422 519 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 EOGTQ5NDL2 527 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 CAMKMTQ7Z624 323 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 SYT9Q86SS6 491 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 LRRTM4Q86VH4 590 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 BHLHE41Q9C0J9 482 aaPredicted RBP12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 CYSLTR2Q9NS75 346 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 FBXL2Q9UKC9 423 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 SLC45A1Q9Y2W3 748 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 MEIKINA0A087WXM9 373 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 ARHGEF33A8MVX0 844 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 GFYI3L273 518 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 FAAHO00519 579 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 OAZ2O95190 189 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 C8GP07360 202 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 ZP3P21754 424 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 THPOP40225 353 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 PREPP48147 710 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 PITPNBP48739 271 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 AKR1D1P51857 326 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 C21orf58P58505 322 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 ERVFC1P60507 584 aa12.66□□□□□ -0.38
CCDC88C-201ENST00000331194 PURAQ00577 322 aaKnown RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms