RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 C2orf42Q9NWW7 574 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 GPR83Q9NYM4 423 aa13.62□□□□□ -0.23
COL7A1-201ENST00000328333 RGPD5Q99666 1765 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 BRINP1O60477 761 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 SDC3O75056 442 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 EFNA1P20827 205 aaPredicted RBP13.61□□□□□ -0.23
COL7A1-201ENST00000328333 LSSP48449 732 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 UBE2UQ5VVX9 321 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 OR9A4Q8NGU2 314 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 TBC1D20Q96BZ9 403 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 ALG8Q9BVK2 526 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 POLEQ07864 2286 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 A0A0G2JN53 185 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 SNNO75324 88 aaPredicted RBP13.61□□□□□ -0.23
COL7A1-201ENST00000328333 FBXO22Q8NEZ5 403 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 PHOSPHO1Q8TCT1 267 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 SGTBQ96EQ0 304 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 NIPAL2Q9H841 368 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 VRTNQ9H8Y1 702 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 IL26Q9NPH9 171 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 SARDHQ9UL12 918 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 MAST2Q6P0Q8 1798 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 TUBGCP6Q96RT7 1819 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.61□□□□□ -0.23
COL7A1-201ENST00000328333 UPK3BL1B0FP48 263 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 UPK3BL2E5RIL1 263 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 RNF225M0QZC1 329 aaPredicted RBP13.61□□□□□ -0.23
COL7A1-201ENST00000328333 RHOP08100 348 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 UBL4AP11441 157 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 PPP1R3AQ16821 1122 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 TMEM150AQ86TG1 271 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 TFAP2CQ92754 450 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 RBMXL1Q96E39 390 aaKnown RBP13.61□□□□□ -0.23
COL7A1-201ENST00000328333 RANBP9Q96S59 729 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 EVLQ9UI08 416 aaPredicted RBP13.61□□□□□ -0.23
COL7A1-201ENST00000328333 N4BP2Q86UW6 1770 aaPredicted RBP13.61□□□□□ -0.23
COL7A1-201ENST00000328333 EMC8O43402 210 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 PCGF2P35227 344 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 GRIK5Q16478 980 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 ESCO2Q56NI9 601 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 SULF2Q8IWU5 870 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 ARMC5Q96C12 935 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 SLC25A44Q96H78 314 aaPredicted RBP13.61□□□□□ -0.23
COL7A1-201ENST00000328333 PTPN18Q99952 460 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 RGPD2P0DJD1 1756 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 RIMBP3CA6NJZ7 1639 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 RIMBP3BA6NNM3 1639 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 RIMBP3Q9UFD9 1639 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 WNK2Q9Y3S1 2297 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 SUOXP51687 545 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 UGCGQ16739 394 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 KLHDC8BQ8IXV7 354 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 LRRC25Q8N386 305 aaPredicted RBP13.61□□□□□ -0.23
COL7A1-201ENST00000328333 INTS6Q9UL03 887 aaKnown RBP13.61□□□□□ -0.23
COL7A1-201ENST00000328333 SLC35F4A4IF30 521 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 KCNJ13O60928 360 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 KCNK2O95069 426 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 GNSP15586 552 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 GNB3P16520 340 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 NCBP2-AS2Q69YL0 99 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 SERPINA11Q86U17 422 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 KLBQ86Z14 1044 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 LRRN4Q8WUT4 740 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 POLMQ9NP87 494 aaPredicted RBP13.61□□□□□ -0.23
COL7A1-201ENST00000328333 MRPL42Q9Y6G3 142 aaKnown RBP13.61□□□□□ -0.23
COL7A1-201ENST00000328333 CLDN24A6NM45 220 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 SIX3O95343 332 aaPredicted RBP13.61□□□□□ -0.23
COL7A1-201ENST00000328333 RAB30Q15771 203 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 FBXO48Q5FWF7 155 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 PPP2R2DQ66LE6 453 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 ALKBH2Q6NS38 261 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 HORMAD2Q8N7B1 307 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 LRRC37A3O60309 1634 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 MDC1Q14676 2089 aaKnown RBP13.61□□□□□ -0.23
COL7A1-201ENST00000328333 TTC24A2A3L6 582 aaPredicted RBP13.61□□□□□ -0.23
COL7A1-201ENST00000328333 TGOLN2O43493 480 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 TGFB1P01137 390 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 SERPINE2P07093 398 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 KDELC1Q6UW63 502 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 ZNF695Q8IW36 515 aa13.61□□□□□ -0.23
COL7A1-201ENST00000328333 NSUN3Q9H649 340 aaKnown RBP13.61□□□□□ -0.23
COL7A1-201ENST00000328333 EEF1E1-BLOC1S5C9J1V9 151 aa13.6□□□□□ -0.23
COL7A1-201ENST00000328333 ANKRD28O15084 1053 aa13.6□□□□□ -0.23
COL7A1-201ENST00000328333 ZNF136P52737 540 aa13.6□□□□□ -0.23
COL7A1-201ENST00000328333 SLC6A19Q695T7 634 aa13.6□□□□□ -0.23
COL7A1-201ENST00000328333 BRIX1Q8TDN6 353 aaKnown RBP13.6□□□□□ -0.23
COL7A1-201ENST00000328333 ADAMTS14Q8WXS8 1223 aa13.6□□□□□ -0.23
COL7A1-201ENST00000328333 ZNF75AQ96N20 296 aa13.6□□□□□ -0.23
COL7A1-201ENST00000328333 BACE2Q9Y5Z0 518 aa13.6□□□□□ -0.23
COL7A1-201ENST00000328333 A0A1W2PPL8 197 aa13.6□□□□□ -0.23
COL7A1-201ENST00000328333 SMAD9O15198 467 aaKnown RBP13.6□□□□□ -0.23
COL7A1-201ENST00000328333 ADH1BP00325 375 aa13.6□□□□□ -0.23
COL7A1-201ENST00000328333 ELK1P19419 428 aa13.6□□□□□ -0.23
COL7A1-201ENST00000328333 DBPQ10586 325 aaPredicted RBP13.6□□□□□ -0.23
COL7A1-201ENST00000328333 GDPD4Q6W3E5 623 aa13.6□□□□□ -0.23
COL7A1-201ENST00000328333 ACOT11Q8WXI4 607 aaPredicted RBP13.6□□□□□ -0.23
COL7A1-201ENST00000328333 NICN1Q9BSH3 213 aa13.6□□□□□ -0.23
COL7A1-201ENST00000328333 SLC22A7Q9Y694 548 aa13.6□□□□□ -0.23
COL7A1-201ENST00000328333 E7ESA3 106 aa13.6□□□□□ -0.23
COL7A1-201ENST00000328333 TXNL1O43396 289 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms