RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 ATG4BQ9Y4P1 393 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 ENPP4Q9Y6X5 453 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 LY75O60449 1722 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 NPC1O15118 1278 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 SNAPINO95295 136 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 MMP3P08254 477 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 ATXN1LP0C7T5 689 aaKnown RBP6.1□□□□□ -1.43
VPS35-201ENST00000299138 TACR2P21452 398 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 AHCYP23526 432 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 BDKRB2P30411 391 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 DGKGP49619 791 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 IGSF11Q5DX21 431 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 SLC22A10Q63ZE4 541 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 LAS2Q8IYD9 372 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 SLC22A15Q8IZD6 547 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 ZNF527Q8NB42 609 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 KCT2Q8NC54 265 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 C2CD4CQ8TF44 421 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 S100A16Q96FQ6 103 aaKnown RBP6.1□□□□□ -1.43
VPS35-201ENST00000299138 SOHLH2Q9NX45 425 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 ERVK13-1Q9NX77 482 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 DHDHQ9UQ10 334 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 PUS1Q9Y606 427 aaKnown RBP eCLIP6.1□□□□□ -1.43
VPS35-201ENST00000299138 COL4A1P02462 1669 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 MYOCOSA0A1B0GUC4 107 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 J3QLW9 94 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 SORBS2O94875 1100 aaKnown RBP6.09□□□□□ -1.43
VPS35-201ENST00000299138 PAHP00439 452 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 CSTBP04080 98 aaKnown RBP6.09□□□□□ -1.43
VPS35-201ENST00000299138 ZNF19P17023 458 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 DGKQP52824 942 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 HSF1Q00613 529 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 SPOCK1Q08629 439 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 ST3GAL4Q11206 333 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 SREBF2Q12772 1141 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 CPSF6Q16630 551 aaKnown RBP eCLIP6.09□□□□□ -1.43
VPS35-201ENST00000299138 LRRC26Q2I0M4 334 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 SLC39A12Q504Y0 691 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 Q6ZSR9 355 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 OSTM1Q86WC4 334 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 NPAS3Q8IXF0 933 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 OR4K2Q8NGD2 314 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 OR52N2Q8NGI0 321 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 XAGE5Q8WWM1 108 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 PPCDCQ96CD2 204 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 FAM122AQ96E09 287 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 FOXN4Q96NZ1 517 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 EXOGQ9Y2C4 368 aaKnown RBP6.09□□□□□ -1.43
VPS35-201ENST00000299138 HS3ST4Q9Y661 456 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 A0A087WZY1 265 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 A0A1B0GTQ1 180 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 C20orf202A1L168 122 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 TOR1AO14656 332 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 EOMESO95936 686 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 ZNF30P17039 623 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 AKR1C4P17516 323 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 CHRNB4P30926 498 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 CA5AP35218 305 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 CHIT1Q13231 466 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 SPHARQ15513 63 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 MS4A13Q5J8X5 152 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 SPANXN4Q5MJ08 99 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 CARD17Q5XLA6 110 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 PDE12Q6L8Q7 609 aaKnown RBP6.09□□□□□ -1.43
VPS35-201ENST00000299138 LINGO4Q6UY18 593 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 BAGE3Q86Y29 109 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 BAGE2Q86Y30 109 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 MS4A15Q8N5U1 240 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 COPS5Q92905 334 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 TM9SF2Q99805 663 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 PCBD2Q9H0N5 130 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 WASH6PQ9NQA3 447 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 IMP3Q9NV31 184 aaKnown RBP6.09□□□□□ -1.43
VPS35-201ENST00000299138 DIMT1Q9UNQ2 313 aaKnown RBP6.09□□□□□ -1.43
VPS35-201ENST00000299138 MEIOCA2RUB1 952 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 SLC31A2O15432 143 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 SMIM10L2AP0DMW4 78 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 SMIM10L2BP0DMW5 78 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 OR1G1P47890 313 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 PRKXP51817 358 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 IRF3Q14653 427 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 GANABQ14697 944 aaKnown RBP6.09□□□□□ -1.43
VPS35-201ENST00000299138 DESI1Q6ICB0 168 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 TMEM130Q8N3G9 435 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 OR51D1Q8NGF3 324 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 SLC7A13Q8TCU3 470 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 TANKQ92844 425 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 POLDIP3Q9BY77 421 aaKnown RBP6.09□□□□□ -1.43
VPS35-201ENST00000299138 NAA50Q9GZZ1 169 aaKnown RBP6.09□□□□□ -1.43
VPS35-201ENST00000299138 DPEP3Q9H4B8 488 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 DNMT3LQ9UJW3 386 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 CORINQ9Y5Q5 1042 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 TRAPPC13A5PLN9 417 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 NPEPPSL1A6NEC2 478 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 ARPC5O15511 151 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 VTNP04004 478 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 PCCBP05166 539 aa6.09□□□□□ -1.43
VPS35-201ENST00000299138 POLR2CP19387 275 aaPredicted RBP6.09□□□□□ -1.43
VPS35-201ENST00000299138 HOXA11P31270 313 aaPredicted RBP6.09□□□□□ -1.43
VPS35-201ENST00000299138 ATP5C1P36542 298 aaKnown RBP6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms