RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 SDC3O75056 442 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 LDB3O75112 727 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 LGI1O95970 557 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 CYP4B1P13584 511 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 HOXA6P31267 233 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 MLLT10P55197 1068 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 CSNK2BP67870 215 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 FAM214AQ32MH5 1076 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 TCTE1Q5JU00 501 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 SYT6Q5T7P8 510 aaPredicted RBP14.33□□□□□ -0.12
SF3B4-201ENST00000271628 HEPHL1Q6MZM0 1159 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 FAM111BQ6SJ93 734 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 ADAMTS18Q8TE60 1221 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 S100ZQ8WXG8 99 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 PITX2Q99697 317 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 NMNAT1Q9HAN9 279 aaPredicted RBP14.33□□□□□ -0.12
SF3B4-201ENST00000271628 LRIT1Q9P2V4 623 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 MRPS33Q9Y291 106 aaKnown RBP14.33□□□□□ -0.12
SF3B4-201ENST00000271628 PCDHGA10Q9Y5H3 936 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 KCNE3Q9Y6H6 103 aa14.33□□□□□ -0.12
SF3B4-201ENST00000271628 E9PQ18 207 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 SYT5O00445 386 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 FFAR1O14842 300 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 NUDT21O43809 227 aaKnown RBP14.32□□□□□ -0.12
SF3B4-201ENST00000271628 OXSR1O95747 527 aaPredicted RBP14.32□□□□□ -0.12
SF3B4-201ENST00000271628 IMPDH2P12268 514 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 MLLT3P42568 568 aaPredicted RBP14.32□□□□□ -0.12
SF3B4-201ENST00000271628 CD97P48960 835 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 PROX2Q3B8N5 592 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 CARFQ8N187 725 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 SLC16A11Q8NCK7 471 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 OR9A4Q8NGU2 314 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 VANGL1Q8TAA9 524 aaPredicted RBP14.32□□□□□ -0.12
SF3B4-201ENST00000271628 ZNF675Q8TD23 568 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 SLC35A4Q96G79 324 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 AHCYL2Q96HN2 611 aaKnown RBP14.32□□□□□ -0.12
SF3B4-201ENST00000271628 DHRS1Q96LJ7 313 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 ZNF285Q96NJ3 590 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 TGM7Q96PF1 710 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 RSPO3Q9BXY4 272 aaPredicted RBP14.32□□□□□ -0.12
SF3B4-201ENST00000271628 SLC38A1Q9H2H9 487 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 ANKRA2Q9H9E1 313 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 UCKL1Q9NWZ5 548 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 ERVK-18Q9QC07 812 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 DSPPQ9NZW4 1301 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 FUOMA2VDF0 154 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 CHST10O43529 356 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 RDH16O75452 317 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 SOX30O94993 753 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 NSA2O95478 260 aaKnown RBP14.32□□□□□ -0.12
SF3B4-201ENST00000271628 ALPPP05187 535 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 H1F0P07305 194 aaKnown RBP14.32□□□□□ -0.12
SF3B4-201ENST00000271628 SLC35E2P0CK97 266 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 NT5EP21589 574 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 OPRL1P41146 370 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 SERPINB10P48595 397 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 ST13P50502 369 aaKnown RBP14.32□□□□□ -0.12
SF3B4-201ENST00000271628 ITGADQ13349 1161 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 ZNF311Q5JNZ3 666 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 DCST1Q5T197 706 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 DEF8Q6ZN54 512 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 IGFN1Q86VF2 1251 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 IPCEF1Q8WWN9 437 aaPredicted RBP14.32□□□□□ -0.12
SF3B4-201ENST00000271628 NR4A3Q92570 626 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 SLC9A6Q92581 669 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 YIPF6Q96EC8 236 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 PRDM6Q9NQX0 595 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 SOHLH2Q9NX45 425 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 SLC13A4Q9UKG4 626 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 SPAG17Q6Q759 2223 aa14.32□□□□□ -0.12
SF3B4-201ENST00000271628 THADAQ6YHU6 1953 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 M0R3G1 203 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 KPNA4O00629 521 aaPredicted RBP14.31□□□□□ -0.12
SF3B4-201ENST00000271628 RNH1P13489 461 aaKnown RBP14.31□□□□□ -0.12
SF3B4-201ENST00000271628 CBLP22681 906 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 ALDH4A1P30038 563 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 FMO3P31513 532 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 CHRNEQ04844 493 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 MAD2L1BPQ15013 274 aaPredicted RBP14.31□□□□□ -0.12
SF3B4-201ENST00000271628 DGUOKQ16854 277 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 PRICKLE4Q2TBC4 344 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 ARHGAP11BQ3KRB8 267 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 TRMT12Q53H54 448 aaKnown RBP14.31□□□□□ -0.12
SF3B4-201ENST00000271628 FHL5Q5TD97 284 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 SLCO6A1Q86UG4 719 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 ZBTB46Q86UZ6 589 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 LINC00471Q8N535 108 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 TMCO5AQ8N6Q1 288 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 CDRT4Q8N9R6 151 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 ZNF540Q8NDQ6 660 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 TMEM52Q8NDY8 209 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 NIPSNAP1Q9BPW8 284 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 PIGUQ9H490 435 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 MTHFD2LQ9H903 347 aaPredicted RBP14.31□□□□□ -0.12
SF3B4-201ENST00000271628 CACYBPQ9HB71 228 aaKnown RBP14.31□□□□□ -0.12
SF3B4-201ENST00000271628 RLIMQ9NVW2 624 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 RHCGQ9UBD6 479 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 IFT52Q9Y366 437 aa14.31□□□□□ -0.12
SF3B4-201ENST00000271628 HYKKA2RU49 373 aa14.3□□□□□ -0.12
SF3B4-201ENST00000271628 FAM227AF5H4B4 570 aa14.3□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms