RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 TMEM225Q6GV28 225 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 BLOC1S3Q6QNY0 202 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 ENPP7Q6UWV6 458 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 OR6N1Q8NGY5 312 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 SPRYD4Q8WW59 207 aaPredicted RBP5.8□□□□□ -1.48
VPS13D-201ENST00000011700 MYLIPQ8WY64 445 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 CDKN2AIPNLQ96HQ2 116 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 JAM3Q9BX67 310 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 QRSL1Q9H0R6 528 aaKnown RBP5.8□□□□□ -1.48
VPS13D-201ENST00000011700 TMEM185BQ9H7F4 350 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 PREBQ9HCU5 417 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 POLD4Q9HCU8 107 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 FAM170BA6NMN3 283 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 UPK1BO75841 260 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 H2BFMP0C1H6 154 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 MYCLP1P12525 358 aaPredicted RBP5.8□□□□□ -1.48
VPS13D-201ENST00000011700 IL3RAP26951 378 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 PCGF2P35227 344 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 HNF1BP35680 557 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 PLGLB1Q02325 96 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 MXD1Q05195 221 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 UPP1Q16831 310 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 AGAP7PQ5VUJ5 663 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 AGAP6Q5VW22 663 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 DEFB128Q7Z7B8 93 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 EMID1Q96A84 441 aaPredicted RBP5.8□□□□□ -1.48
VPS13D-201ENST00000011700 LMLNQ96KR4 655 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 TEPSINQ96N21 525 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 AGAP4Q96P64 663 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 ZNF649Q9BS31 505 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 ATG5Q9H1Y0 275 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 TOR3AQ9H497 397 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 ACP6Q9NPH0 428 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 GSKIPQ9P0R6 139 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 DUX1O43812 170 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 SOX15O60248 233 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 BEST1O76090 585 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 TFP02787 698 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 ADH4P08319 380 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 STAG3L2P0CL84 134 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 ITGAMP11215 1152 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 IMPA1P29218 277 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 RAB28P51157 221 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 FAPQ12884 760 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 PRAMEF18Q5VWM3 479 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 TLDC1Q6P9B6 456 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 L3MBTL4Q8NA19 623 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 LNX1Q8TBB1 728 aaPredicted RBP5.8□□□□□ -1.48
VPS13D-201ENST00000011700 TECTBQ96PL2 329 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 CCNL2Q96S94 520 aaPredicted RBP5.8□□□□□ -1.48
VPS13D-201ENST00000011700 PIGMQ9H3S5 423 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 CERS4Q9HA82 394 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 PCDHB10Q9UN67 800 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 TUBAL3A6NHL2 446 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 UNC119BA6NIH7 251 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 TMEM212A6NML5 194 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 hCG_2039718K7EN88 272 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 ERI3O43414 337 aaKnown RBP5.8□□□□□ -1.48
VPS13D-201ENST00000011700 CHAF1BQ13112 559 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 ZNF454Q8N9F8 522 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 IL17RCQ8NAC3 791 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 ACER1Q8TDN7 264 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 DCUN1D4Q92564 292 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 POLDIP3Q9BY77 421 aaKnown RBP5.8□□□□□ -1.48
VPS13D-201ENST00000011700 BCO2Q9BYV7 579 aa5.8□□□□□ -1.48
VPS13D-201ENST00000011700 LRIT2A6NDA9 550 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 TMEM200CA6NKL6 621 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 TO15178 435 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 ITGB2P05107 769 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 TRAPPC2P0DI81 140 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 TRAPPC2BP0DI82 140 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 CKMT1AP12532 417 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 CPOXP36551 454 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 PSMD8P48556 350 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 BTBD16Q32M84 506 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 PRAMEF8Q5VWM4 474 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 PRAMEF7Q5VXH5 474 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 CDCA2Q69YH5 1023 aaPredicted RBP5.79□□□□□ -1.48
VPS13D-201ENST00000011700 UHRF2Q96PU4 802 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 SLC22A12Q96S37 553 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 CACNG6Q9BXT2 260 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 CYP8B1Q9UNU6 501 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 HMX3A6NHT5 357 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 OR6C65A6NJZ3 312 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 WASH4PA8MWX3 477 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 F8W036 122 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 SERPINE2P07093 398 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 FGF4P08620 206 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 RPS3P23396 243 aaKnown RBP eCLIP5.79□□□□□ -1.484e-6■■■■■ 40.4
VPS13D-201ENST00000011700 CD34P28906 385 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 AKR1C2P52895 323 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 CDH15P55291 814 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 TAGLNQ01995 201 aaKnown RBP5.79□□□□□ -1.48
VPS13D-201ENST00000011700 ATAD3CQ5T2N8 411 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 OR1J2Q8NGS2 313 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 CHIAQ9BZP6 476 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 GORASP2Q9H8Y8 452 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 EIF2B4Q9UI10 523 aaKnown RBP5.79□□□□□ -1.48
VPS13D-201ENST00000011700 NRAPQ86VF7 1730 aa5.79□□□□□ -1.48
VPS13D-201ENST00000011700 LOC285095A0A1B0GVY8 99 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms