RNA–Protein interactions for RNA: ENST00000005226.11

USH1C-201, Transcript of USH1 protein network component harmonin, humanhuman

APPRIS P3 TSL 5 BASIC

Gene USH1C, Length 2,700 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-201ENST00000005226 TCTE3Q8IZS6 198 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 OR4Q3Q8NH05 313 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 TFGQ92734 400 aaPredicted RBP13.19□□□□□ -0.3
USH1C-201ENST00000005226 MED18Q9BUE0 208 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 TRMT61BQ9BVS5 477 aaKnown RBP13.19□□□□□ -0.3
USH1C-201ENST00000005226 HDHD2Q9H0R4 259 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 KLHL31Q9H511 634 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 SEMA4GQ9NTN9 838 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 TEKT2Q9UIF3 430 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 SLC9A8Q9Y2E8 581 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 UNC80Q8N2C7 3258 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 TMEM129A0AVI4 362 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 LZTS3O60299 673 aaPredicted RBP13.19□□□□□ -0.3
USH1C-201ENST00000005226 ACADMP11310 421 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 ACP5P13686 325 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 HOXB3P14651 431 aaPredicted RBP13.19□□□□□ -0.3
USH1C-201ENST00000005226 ARSBP15848 533 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 ATP6V1E1P36543 226 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 RNF144AP50876 292 aaPredicted RBP13.19□□□□□ -0.3
USH1C-201ENST00000005226 ENTPD8Q5MY95 495 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 IDNKQ5T6J7 187 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 MZT2BQ6NZ67 158 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 NKAIN4Q8IVV8 208 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 TIGD4Q8IY51 512 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 PEX5LQ8IYB4 626 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 IL17RCQ8NAC3 791 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 SLC37A3Q8NCC5 494 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 ZNF485Q8NCK3 441 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 NACC2Q96BF6 587 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 COQ10AQ96MF6 247 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 AMDHD1Q96NU7 426 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 XKR8Q9H6D3 395 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 NEUROD4Q9HD90 331 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 SLC23A1Q9UHI7 598 aa13.19□□□□□ -0.3
USH1C-201ENST00000005226 SOCS6O14544 535 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 ARHGEF9O43307 516 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 AKAP8O43823 692 aaKnown RBP13.18□□□□□ -0.3
USH1C-201ENST00000005226 UBXN7O94888 489 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 PAPLNO95428 1278 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 HMGN2P05204 90 aaKnown RBP13.18□□□□□ -0.3
USH1C-201ENST00000005226 TRHRP34981 398 aaPredicted RBP13.18□□□□□ -0.3
USH1C-201ENST00000005226 TRIM23P36406 574 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 STXBP1P61764 594 aaKnown RBP13.18□□□□□ -0.3
USH1C-201ENST00000005226 RNASE12Q5GAN4 147 aaKnown RBP13.18□□□□□ -0.3
USH1C-201ENST00000005226 FAM27D1Q5T7N8 215 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 NDUFAF5Q5TEU4 345 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 SETD7Q8WTS6 366 aaKnown RBP13.18□□□□□ -0.3
USH1C-201ENST00000005226 TRIM63Q969Q1 353 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 NUS1Q96E22 293 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 ZSWIM3Q96MP5 696 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 GON7Q9BXV9 100 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 AICDAQ9GZX7 198 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 SAGE1Q9NXZ1 904 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 SIRT4Q9Y6E7 314 aaPredicted RBP13.18□□□□□ -0.3
USH1C-201ENST00000005226 TRDV1A0A1B0GX56 115 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 INMT-MINDY4F8WBC2 141 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 KIAA0355O15063 1070 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 NDUFS4O43181 175 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 PIP5K1CO60331 668 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 HCN1O60741 890 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 TFPIP10646 304 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 C6P13671 934 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 UQCRC1P31930 480 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 OR3A3P47888 321 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 MINDY4Q4G0A6 757 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 FAM205BPQ63HN1 556 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 VASNQ6EMK4 673 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 ZNF793Q6ZN11 406 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 TMEM91Q6ZNR0 172 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 CACUL1Q86Y37 369 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 GHDCQ8N2G8 530 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 ARIH2OSQ8N7S6 290 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 RASSF5Q8WWW0 418 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 RAD51AP1Q96B01 352 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 ARSGQ96EG1 525 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 SECISBP2Q96T21 854 aaKnown RBP13.18□□□□□ -0.3
USH1C-201ENST00000005226 OR52A5Q9H2C5 316 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 PPIL3Q9H2H8 161 aaKnown RBP13.18□□□□□ -0.3
USH1C-201ENST00000005226 DDX31Q9H8H2 851 aaKnown RBP13.18□□□□□ -0.3
USH1C-201ENST00000005226 MED20Q9H944 212 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 EXTL2Q9UBQ6 330 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 KLHL21Q9UJP4 597 aa13.18□□□□□ -0.3
USH1C-201ENST00000005226 ZFR2Q9UPR6 939 aaKnown RBP13.18□□□□□ -0.3
USH1C-201ENST00000005226 LATO43561 262 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 C1QBP02746 253 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 FUT1P19526 365 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 POU3F3P20264 500 aaPredicted RBP13.17□□□□□ -0.3
USH1C-201ENST00000005226 PPP2R1BP30154 601 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 FGF9P31371 208 aaPredicted RBP13.17□□□□□ -0.3
USH1C-201ENST00000005226 CLDN20P56880 219 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 RRAS2P62070 204 aaPredicted RBP13.17□□□□□ -0.3
USH1C-201ENST00000005226 TCEAL5Q5H9L2 206 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 SLC25A30Q5SVS4 291 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 LCTLQ6UWM7 567 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 CD300LDQ6UXZ3 194 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 SFTPA1Q8IWL2 248 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 ELMOD2Q8IZ81 293 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 SIX5Q8N196 739 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 KREMEN2Q8NCW0 462 aa13.17□□□□□ -0.3
USH1C-201ENST00000005226 DUSP18Q8NEJ0 188 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms