RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 CA5BQ9Y2D0 317 aa10.04□□□□□ -0.8
USP28-201ENST00000003302 UGT2B17O75795 530 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 GYPBP06028 91 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 GKN3PP0CG01 181 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 ITGA2P17301 1181 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 P2RY2P41231 377 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 IL12RB1P42701 662 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 RORCP51449 518 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 TFF2Q03403 129 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 CCDC85BQ15834 202 aaPredicted RBP10.03□□□□□ -0.8
USP28-201ENST00000003302 WSCD2Q2TBF2 565 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 PYDC2Q56P42 97 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 TMEM91Q6ZNR0 172 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 KIAA0907Q7Z7F0 614 aaPredicted RBP10.03□□□□□ -0.8
USP28-201ENST00000003302 KLHDC8AQ8IYD2 350 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 LILRB4Q8NHJ6 448 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 DHRS1Q96LJ7 313 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 ORAI3Q9BRQ5 295 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 MCOLN1Q9GZU1 580 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 CORO2BQ9UQ03 480 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 CMAHPQ9Y471 501 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 ZNF197O14709 1029 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 AKAP8O43823 692 aaKnown RBP10.03□□□□□ -0.8
USP28-201ENST00000003302 MRPS14O60783 128 aaKnown RBP10.03□□□□□ -0.8
USP28-201ENST00000003302 ADAM11O75078 769 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 FAM157BP0CG42 384 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 PSKH1P11801 424 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 PEBP1P30086 187 aaKnown RBP10.03□□□□□ -0.8
USP28-201ENST00000003302 CSNK2BP67870 215 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 ZNF234Q14588 700 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 TATDN3Q17R31 274 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 EOGTQ5NDL2 527 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 TMEM201Q5SNT2 666 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 TTC23LQ6PF05 361 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 OR4M2Q8NGB6 313 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 OR2L2Q8NH16 312 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 NACC2Q96BF6 587 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 CRELD1Q96HD1 420 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 A3GALT2U3KPV4 340 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 MYL12BO14950 172 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 PTX3P26022 381 aaPredicted RBP10.03□□□□□ -0.8
USP28-201ENST00000003302 CDK5Q00535 292 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 PLAURQ03405 335 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 TUBA3EQ6PEY2 450 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 YIPF7Q8N8F6 280 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 TMEM145Q8NBT3 493 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 OR8J1Q8NGP2 316 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 OR2A1Q8NGT9 310 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 HSD17B8Q92506 261 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 COL26A1Q96A83 441 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 INSM2Q96T92 566 aaPredicted RBP10.03□□□□□ -0.8
USP28-201ENST00000003302 SPATA9Q9BWV2 254 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 A4GALTQ9NPC4 353 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 TMCC3Q9ULS5 477 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 ASXL3Q9C0F0 2248 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 TSPAN11A1L157 253 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 OR2W5A6NFC9 320 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 C4orf47A7E2U8 309 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 TSPAN19P0C672 248 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 ZGLP1P0C6A0 271 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 IL9P15248 144 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 PTPN2P17706 415 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 ENDOUP21128 410 aaKnown RBP10.03□□□□□ -0.8
USP28-201ENST00000003302 NOS3P29474 1203 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 DRD3P35462 400 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 PDX1P52945 283 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 MAPK14Q16539 360 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 ZC3H14Q6PJT7 736 aaKnown RBP10.03□□□□□ -0.8
USP28-201ENST00000003302 FAM92BQ6ZTR7 304 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 PRSS41Q7RTY9 318 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 PROKR2Q8NFJ6 384 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 SLC38A1Q9H2H9 487 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 DYRK4Q9NR20 520 aa10.03□□□□□ -0.8
USP28-201ENST00000003302 ARID1AO14497 2285 aa10.02□□□□□ -0.8
USP28-201ENST00000003302 A0A075B6Q4 140 aa10.02□□□□□ -0.8
USP28-201ENST00000003302 LRIT2A6NDA9 550 aa10.02□□□□□ -0.8
USP28-201ENST00000003302 POLR1CO15160 346 aaPredicted RBP10.02□□□□□ -0.8
USP28-201ENST00000003302 RB1P06400 928 aa10.02□□□□□ -0.8
USP28-201ENST00000003302 CTSBP07858 339 aa10.02□□□□□ -0.8
USP28-201ENST00000003302 MRPL3P09001 348 aaKnown RBP10.02□□□□□ -0.8
USP28-201ENST00000003302 CCNYL3P0C7X3 344 aa10.02□□□□□ -0.8
USP28-201ENST00000003302 MAT2AP31153 395 aaKnown RBP10.02□□□□□ -0.8
USP28-201ENST00000003302 GPAT3Q53EU6 434 aa10.02□□□□□ -0.8
USP28-201ENST00000003302 CCDC92Q53HC0 331 aaPredicted RBP10.02□□□□□ -0.8
USP28-201ENST00000003302 C2orf27AQ580R0 203 aa10.02□□□□□ -0.8
USP28-201ENST00000003302 LAMTOR1Q6IAA8 161 aa10.02□□□□□ -0.8
USP28-201ENST00000003302 CNKSR3Q6P9H4 555 aa10.02□□□□□ -0.8
USP28-201ENST00000003302 PPP1R3EQ9H7J1 279 aa10.02□□□□□ -0.8
USP28-201ENST00000003302 CERS4Q9HA82 394 aa10.02□□□□□ -0.8
USP28-201ENST00000003302 PAK6Q9NQU5 681 aaPredicted RBP10.02□□□□□ -0.8
USP28-201ENST00000003302 C2orf16Q68DN1 1984 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 SH3D21A4FU49 640 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 ZNF860A6NHJ4 632 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 RGS13O14921 159 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 ERI3O43414 337 aaKnown RBP10.02□□□□□ -0.81
USP28-201ENST00000003302 KRT8P05787 483 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 SLC2A2P11168 524 aaPredicted RBP10.02□□□□□ -0.81
USP28-201ENST00000003302 CHRNB1P11230 501 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 EPHA5P54756 1037 aa10.02□□□□□ -0.81
USP28-201ENST00000003302 CDK10Q15131 360 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms