RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 H7BY64 318 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ARPC1BO15143 372 aaKnown RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ITPKAP23677 461 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 RFX2P48378 723 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 OR10A3P58181 314 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 MYO9BQ13459 2157 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 SNTB1Q13884 538 aaKnown RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 CTXN3Q4LDR2 81 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 UNC50Q53HI1 259 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ZMAT1Q5H9K5 638 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 EEF1AKMT2Q5JPI9 291 aaKnown RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 FAM209AQ5JX71 171 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF585AQ6P3V2 769 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 CMIPQ8IY22 773 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 AVL9Q8NBF6 648 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 OR4K2Q8NGD2 314 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 OR2AP1Q8NGE2 309 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 DUSP19Q8WTR2 217 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 SLC5A11Q8WWX8 675 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 SFXN2Q96NB2 322 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 TMEM43Q9BTV4 400 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 OR11A1Q9GZK7 315 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 PCDHGA5Q9Y5G8 931 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 KNDC1Q76NI1 1749 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 NEDD8-MDP1E9PL57 170 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 RNASET2O00584 256 aaKnown RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 B3GAT3O94766 335 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 GBAP04062 536 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 SLC35G4P0C7Q5 338 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ARL2P36404 184 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 SRP9P49458 86 aaKnown RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 KIAA1024LP59773 190 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 B2MP61769 119 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 FCN2Q15485 313 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ELFN2Q5R3F8 820 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 OR4F3Q6IEY1 312 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 OPN5Q6U736 354 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF550Q7Z398 422 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 CDH26Q8IXH8 852 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 PQLC3Q8N755 202 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 SLC30A7Q8NEW0 376 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 UBTD2Q8WUN7 234 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 YIPF6Q96EC8 236 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 GABARAPL3Q9BY60 117 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 BCL2L14Q9BZR8 327 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 NXF2Q9GZY0 626 aaKnown RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 B4DXG7 233 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 INSIG1O15503 277 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 MMP7P09237 267 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 NDUFS1P28331 727 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 NKX3-2P78367 333 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 RAB11BQ15907 218 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 RNASE12Q5GAN4 147 aaKnown RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 DCST2Q5T1A1 773 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 OR6C4Q8NGE1 309 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 FBXO27Q8NI29 283 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 SFXN5Q8TD22 340 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 CIPCQ9C0C6 399 aa4.45□□□□□ -1.7
SCN1A-220ENST00000641603 METTL17Q9H7H0 456 aaPredicted RBP4.45□□□□□ -1.7
SCN1A-220ENST00000641603 TMEM233B4DJY2 109 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SYT7O43581 403 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 S1PR1P21453 382 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 PPT1P50897 306 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ISL1P61371 349 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ZNF266Q14584 549 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 CHRFAM7AQ494W8 412 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SCIMPQ6UWF3 145 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 GPRC5AQ8NFJ5 357 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 BRF2Q9HAW0 419 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ACAD8Q9UKU7 415 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 PQLC2LA1A4F0 135 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ADH1AP07327 375 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 CALCBP10092 127 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 DAOAP59103 153 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 HTR4Q13639 388 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 INAVAQ3KP66 663 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SLC30A6Q6NXT4 461 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 CD300LGQ6UXG3 332 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 C7orf61Q8IZ16 206 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 SLC5A8Q8N695 610 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 FNDC9Q8TBE3 224 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ST7LQ8TDW4 575 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 C1orf74Q96LT6 269 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 CRTAC1Q9NQ79 661 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 ZDHHC3Q9NYG2 299 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 POMT2Q9UKY4 750 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 YDJCA8MPS7 323 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 I6L893 689 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 HLA-HP01893 362 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 DIO3P55073 304 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 CDH8P55286 799 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 TUSC3Q13454 348 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 C9orf57Q5W0N0 161 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 IGDCC3Q8IVU1 814 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 PELI3Q8N2H9 469 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 GRIN3AQ8TCU5 1115 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 MZB1Q8WU39 189 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 CMBLQ96DG6 245 aa4.44□□□□□ -1.7
SCN1A-220ENST00000641603 PRR11Q96HE9 360 aaPredicted RBP4.44□□□□□ -1.7
SCN1A-220ENST00000641603 TGM7Q96PF1 710 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms