RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 NNATQ16517 81 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 RAB12Q6IQ22 244 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF773Q6PK81 442 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 SLC16A9Q7RTY1 509 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 BPHLQ86WA6 291 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 GLYATL2Q8WU03 294 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 H1FXQ92522 213 aaKnown RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 CNOT9Q92600 299 aaKnown RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 DAZAP1Q96EP5 407 aaKnown RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 HSPBAP1Q96EW2 488 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 UBL7Q96S82 380 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 QPCTLQ9NXS2 382 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 COL20A1Q9P218 1284 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 FIGNL2A6NMB9 653 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 J3KR12 359 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 MSR1P21757 451 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 TM4SF4P48230 202 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 MLLT6P55198 1093 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 HTRA3P83110 453 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 CCNJQ5T5M9 372 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 NAPRTQ6XQN6 538 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 C14orf80Q86SX3 495 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF761Q86XN6 746 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 GOLM1Q8NBJ4 401 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 OR2T4Q8NH00 348 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 OR14A16Q8NHC5 309 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 DNAJB9Q9UBS3 223 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 FEZF1A0PJY2 475 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 UBFD1O14562 309 aaKnown RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 CH25HO95992 272 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 CRYABP02511 175 aaKnown RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 FABP1P07148 127 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 SLC2A2P11168 524 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 EN2P19622 333 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 S100A12P80511 92 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 INCA1Q0VD86 236 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 PTP4A2Q12974 167 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 TBC1D28Q2M2D7 210 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 GPR153Q6NV75 609 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 GAREM2Q75VX8 874 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 P2RY8Q86VZ1 359 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 SLC43A2Q8N370 569 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 FIBINQ8TAL6 211 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 OR5B12Q96R08 314 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 SLC30A2Q9BRI3 323 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 SOX17Q9H6I2 414 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 FKRPQ9H9S5 495 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 PLEK2Q9NYT0 353 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 COMMD3Q9UBI1 195 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 A0A0D9SEW6 157 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 LCHNA4D1U4 455 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 ABLIM1O14639 778 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 SNAI1O95863 264 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 GBAP04062 536 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 GNAO1P09471 354 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 FCGR2AP12318 317 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 MTPNP58546 118 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 KIAA1211LQ6NV74 962 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 KIF18BQ86Y91 864 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 ZBTB8BQ8NAP8 495 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 PSD4Q8NDX1 1056 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 LNX1Q8TBB1 728 aaPredicted RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 FAM122AQ96E09 287 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 TOX2Q96NM4 488 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 CNN2Q99439 309 aaKnown RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 MED18Q9BUE0 208 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 GRHL1Q9NZI5 618 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 MGAT4BQ9UQ53 548 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 KNTC1P50748 2209 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 GXYLT2A0PJZ3 443 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 C12orf71A8MTZ7 269 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 DDAH2O95865 285 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 SNHG28P0DPA3 235 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 TACR3P29371 465 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 GRIA1P42261 906 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 MAN2A2P49641 1150 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 THBS3P49746 956 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 GSK3AP49840 483 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 TAZQ16635 292 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 PTCHD3Q3KNS1 767 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 SPATS1Q496A3 300 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 ARSHQ5FYA8 562 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 PERM1Q5SV97 790 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 GPR139Q6DWJ6 353 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 FBXL20Q96IG2 436 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 OR51I1Q9H343 314 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 NOSIPQ9Y314 301 aaKnown RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 EXOSC1Q9Y3B2 195 aaKnown RBP5.83□□□□□ -1.48
SCN1A-217ENST00000637988 TRPM6Q9BX84 2022 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 PRSS38A1L453 326 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF840PA6NDX5 716 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 TRAPPC2LH3BP13 241 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 SOCS2O14508 198 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 LATO43561 262 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 DCAF7P61962 342 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 GLO1Q04760 184 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 MSS51Q4VC12 460 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 Q6ZVL8 140 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 MFSD6LQ8IWD5 586 aa5.83□□□□□ -1.48
SCN1A-217ENST00000637988 MMP21Q8N119 569 aa5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms