RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 RASSF5Q8WWW0 418 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 PTCHD1Q96NR3 888 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 BARD1Q99728 777 aaKnown RBP15.73■□□□□ 0.11
CLN3-252ENST00000636907 PIGUQ9H490 435 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 SMPD3Q9NY59 655 aaPredicted RBP15.73■□□□□ 0.11
CLN3-252ENST00000636907 CALML5Q9NZT1 146 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 RARRES3Q9UL19 164 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 MMACHCQ9Y4U1 282 aa15.73■□□□□ 0.11
CLN3-252ENST00000636907 DSPPQ9NZW4 1301 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 FLRT2O43155 660 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 COQ9O75208 318 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 ZIC2O95409 532 aaPredicted RBP15.72■□□□□ 0.11
CLN3-252ENST00000636907 ALPLP05186 524 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 PRKACGP22612 351 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 ACP1P24666 158 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 DNAJA1P31689 397 aaKnown RBP15.72■□□□□ 0.11
CLN3-252ENST00000636907 MAP3K8P41279 467 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 YAP1P46937 504 aaKnown RBP15.72■□□□□ 0.11
CLN3-252ENST00000636907 PPP2R2BQ00005 443 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 KCNC4Q03721 635 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 SERTAD2Q14140 314 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 ARHGAP11BQ3KRB8 267 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 VWA2Q5GFL6 755 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 SWT1Q5T5J6 900 aaKnown RBP15.72■□□□□ 0.11
CLN3-252ENST00000636907 MFSD4BQ5TF39 518 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 MLIPQ5VWP3 458 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 ANKRD34AQ69YU3 496 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 LAIR1Q6GTX8 287 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 B3GNT8Q7Z7M8 397 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 HIPK1Q86Z02 1210 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 MARVELD2Q8N4S9 558 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 PROX1Q92786 737 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 ZNF354BQ96LW1 612 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 SPATA5L1Q9BVQ7 753 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 OSBPL10Q9BXB5 764 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 QRSL1Q9H0R6 528 aaKnown RBP15.72■□□□□ 0.11
CLN3-252ENST00000636907 REEP1Q9H902 201 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 SMURF2Q9HAU4 748 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 OCIAD1Q9NX40 245 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 IFT80Q9P2H3 777 aaPredicted RBP15.72■□□□□ 0.11
CLN3-252ENST00000636907 SAMHD1Q9Y3Z3 626 aaKnown RBP15.72■□□□□ 0.11
CLN3-252ENST00000636907 TESMINQ9Y4I5 508 aa15.72■□□□□ 0.11
CLN3-252ENST00000636907 J3KTA2 159 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 FCMRO60667 390 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 HPRP00739 348 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 IFNW1P05000 195 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 IFNA16P05015 189 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 ITGA2P17301 1181 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 FPR1P21462 350 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 RRM2P31350 389 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 SSTR4P31391 388 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 EFNA3P52797 238 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 HPCAP84074 193 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 ZNF155Q12901 538 aaPredicted RBP15.71■□□□□ 0.11
CLN3-252ENST00000636907 BIKQ13323 160 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 ZNF267Q14586 743 aaPredicted RBP15.71■□□□□ 0.11
CLN3-252ENST00000636907 LAPTM4AQ15012 233 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 SF3A2Q15428 464 aaKnown RBP15.71■□□□□ 0.11
CLN3-252ENST00000636907 MINDY4Q4G0A6 757 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 PWWP2BQ6NUJ5 590 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 FRRS1Q6ZNA5 592 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 QSOX2Q6ZRP7 698 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 COMTD1Q86VU5 262 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 CHERPQ8IWX8 916 aaKnown RBP15.71■□□□□ 0.11
CLN3-252ENST00000636907 COX18Q8N8Q8 333 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 SLC38A9Q8NBW4 561 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 PIK3R3Q92569 461 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 TFAP2CQ92754 450 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 TSLPQ969D9 159 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 ZG16BQ96DA0 208 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 CNBD2Q96M20 576 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 ZNF347Q96SE7 839 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 STACQ99469 402 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 ADI1Q9BV57 179 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 SLC7A5P2Q9GIP4 190 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 GABARAPL1Q9H0R8 117 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 DUSP22Q9NRW4 184 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 USE1Q9NZ43 259 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 FTSJ1Q9UET6 329 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 ENPP4Q9Y6X5 453 aa15.71■□□□□ 0.11
CLN3-252ENST00000636907 NUP210LQ5VU65 1888 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 SCRG1O75711 98 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 DNAJB5O75953 348 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 SNAP29O95721 258 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 EPPINO95925 133 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 ALPPP05187 535 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 GP1BAP07359 652 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 GALNSP34059 522 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 EMDP50402 254 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 RHAGQ02094 409 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 ZFP36L1Q07352 338 aaKnown RBP15.7■□□□□ 0.1
CLN3-252ENST00000636907 MERTKQ12866 999 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 PDK3Q15120 406 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 CCNJQ5T5M9 372 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 TYW3Q6IPR3 259 aaKnown RBP15.7■□□□□ 0.1
CLN3-252ENST00000636907 COX15Q7KZN9 410 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 CARM1Q86X55 608 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 CHDHQ8NE62 594 aaPredicted RBP15.7■□□□□ 0.1
CLN3-252ENST00000636907 OR4D11Q8NGI4 311 aa15.7■□□□□ 0.1
CLN3-252ENST00000636907 GPR151Q8TDV0 419 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms