RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SLC35E2P0CK97 266 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 MLNP12872 115 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 NCF1P14598 390 aaPredicted RBP13.01□□□□□ -0.33
CLN3-249ENST00000636685 SLC25A16P16260 332 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 NAGAP17050 411 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 DSCR9P59020 149 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 IRX1P78414 480 aaPredicted RBP13.01□□□□□ -0.33
CLN3-249ENST00000636685 HMGCS1Q01581 520 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 TMEM35AQ53FP2 167 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 FAM166AQ6J272 317 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 DRICH1Q6PGQ1 229 aaPredicted RBP13.01□□□□□ -0.33
CLN3-249ENST00000636685 DNAJC14Q6Y2X3 702 aaPredicted RBP13.01□□□□□ -0.33
CLN3-249ENST00000636685 DEPDC4Q8N2C3 294 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 ZNF525Q8N782 197 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 SNX31Q8N9S9 440 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 C17orf47Q8NEP4 570 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 HTRA1Q92743 480 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 PTCD3Q96EY7 689 aaKnown RBP13.01□□□□□ -0.33
CLN3-249ENST00000636685 LCORQ96JN0 433 aaPredicted RBP13.01□□□□□ -0.33
CLN3-249ENST00000636685 CAPS2Q9BXY5 557 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 OR51B5Q9H339 312 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 EML4Q9HC35 981 aaKnown RBP13.01□□□□□ -0.33
CLN3-249ENST00000636685 DNAJC11Q9NVH1 559 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 VWA7Q9Y334 891 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 MRPS18CQ9Y3D5 142 aaKnown RBP13.01□□□□□ -0.33
CLN3-249ENST00000636685 ZNF175Q9Y473 711 aa13.01□□□□□ -0.33
CLN3-249ENST00000636685 PRKDCP78527 4128 aaKnown RBP13□□□□□ -0.33
CLN3-249ENST00000636685 C17orf51A8MQB3 221 aa13□□□□□ -0.33
CLN3-249ENST00000636685 EFCAB8A8MWE9 144 aa13□□□□□ -0.33
CLN3-249ENST00000636685 HNF1AP20823 631 aa13□□□□□ -0.33
CLN3-249ENST00000636685 BUD31P41223 144 aaPredicted RBP13□□□□□ -0.33
CLN3-249ENST00000636685 PLCXD2Q0VAA5 305 aa13□□□□□ -0.33
CLN3-249ENST00000636685 TSNQ15631 228 aaKnown RBP13□□□□□ -0.33
CLN3-249ENST00000636685 DTX2Q86UW9 622 aa13□□□□□ -0.33
CLN3-249ENST00000636685 GALNT12Q8IXK2 581 aa13□□□□□ -0.33
CLN3-249ENST00000636685 RNF175Q8N4F7 328 aa13□□□□□ -0.33
CLN3-249ENST00000636685 RFLNBQ8N5W9 214 aa13□□□□□ -0.33
CLN3-249ENST00000636685 PPM1NQ8N819 430 aa13□□□□□ -0.33
CLN3-249ENST00000636685 OR6K3Q8NGY3 331 aa13□□□□□ -0.33
CLN3-249ENST00000636685 ESAMQ96AP7 390 aa13□□□□□ -0.33
CLN3-249ENST00000636685 S100PBPQ96BU1 408 aa13□□□□□ -0.33
CLN3-249ENST00000636685 ZMYND19Q96E35 227 aaPredicted RBP13□□□□□ -0.33
CLN3-249ENST00000636685 WDR34Q96EX3 536 aa13□□□□□ -0.33
CLN3-249ENST00000636685 SIGLEC10Q96LC7 697 aa13□□□□□ -0.33
CLN3-249ENST00000636685 TMEM79Q9BSE2 394 aa13□□□□□ -0.33
CLN3-249ENST00000636685 EFCAB11Q9BUY7 163 aa13□□□□□ -0.33
CLN3-249ENST00000636685 TRIM2Q9C040 744 aa13□□□□□ -0.33
CLN3-249ENST00000636685 XAB2Q9HCS7 855 aaKnown RBP13□□□□□ -0.33
CLN3-249ENST00000636685 WHRNQ9P202 907 aa13□□□□□ -0.33
CLN3-249ENST00000636685 GPR52Q9Y2T5 361 aa13□□□□□ -0.33
CLN3-249ENST00000636685 EMC9Q9Y3B6 208 aa13□□□□□ -0.33
CLN3-249ENST00000636685 LOC100289279A0A1B0GTE1 492 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 A0A1W2PR48 441 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 TAPBPO15533 448 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 KIAA0513O60268 411 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 DLX3O60479 287 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 IPO7O95373 1038 aaKnown RBP12.99□□□□□ -0.33
CLN3-249ENST00000636685 PCNAP12004 261 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 EPB42P16452 691 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 CASP2P42575 452 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 GZMKP49863 264 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 CLDN20P56880 219 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 EEFSECP57772 596 aaKnown RBP12.99□□□□□ -0.33
CLN3-249ENST00000636685 LSM11P83369 360 aaKnown RBP eCLIP12.99□□□□□ -0.33
CLN3-249ENST00000636685 BSPH1Q075Z2 132 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 TSC22D1Q15714 1073 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 HIST2H2ACQ16777 129 aaPredicted RBP12.99□□□□□ -0.33
CLN3-249ENST00000636685 KHDRBS2Q5VWX1 349 aaKnown RBP12.99□□□□□ -0.33
CLN3-249ENST00000636685 HIST2H2AA3Q6FI13 130 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 FRA10AC1Q70Z53 315 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 GPSM1Q86YR5 675 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 ZNF619Q8N2I2 560 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 ADAD1Q96M93 576 aaKnown RBP12.99□□□□□ -0.33
CLN3-249ENST00000636685 CACNG6Q9BXT2 260 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 ITPAQ9BY32 194 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 GRIP2Q9C0E4 1043 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 OR10A4Q9H209 315 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 TSPY26PQ9H489 355 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 CISD1Q9NZ45 108 aaKnown RBP12.99□□□□□ -0.33
CLN3-249ENST00000636685 ZNF337Q9Y3M9 751 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 CAPN6Q9Y6Q1 641 aa12.99□□□□□ -0.33
CLN3-249ENST00000636685 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.98□□□□□ -0.33
CLN3-249ENST00000636685 PLPP1O14494 284 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 RAMP1O60894 148 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 ALDOAP04075 364 aaKnown RBP12.98□□□□□ -0.33
CLN3-249ENST00000636685 NR2F6P10588 404 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 ZNF37AP17032 561 aaPredicted RBP12.98□□□□□ -0.33
CLN3-249ENST00000636685 PSMB1P20618 241 aaKnown RBP12.98□□□□□ -0.33
CLN3-249ENST00000636685 S1PR1P21453 382 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 USF1P22415 310 aaPredicted RBP12.98□□□□□ -0.33
CLN3-249ENST00000636685 MAGEA3P43357 314 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 SLC6A8P48029 635 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 HSPA7P48741 367 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 C21orf58P58505 322 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 LAPTM5Q13571 262 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 ZNF460Q14592 562 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 CRYMQ14894 314 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 PAGE2BQ5JRK9 111 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 DEPDC1Q5TB30 811 aa12.98□□□□□ -0.33
CLN3-249ENST00000636685 FAM45BPQ6NSW5 357 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms