RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 A0A087WUV0 522 aaPredicted RBP16.8■□□□□ 0.28
CLN3-241ENST00000635861 A8MT66 165 aa16.8■□□□□ 0.28
CLN3-241ENST00000635861 KRT6AP02538 564 aa16.8■□□□□ 0.28
CLN3-241ENST00000635861 KRT6BP04259 564 aa16.8■□□□□ 0.28
CLN3-241ENST00000635861 CPN1P15169 458 aa16.8■□□□□ 0.28
CLN3-241ENST00000635861 CTSSP25774 331 aa16.8■□□□□ 0.28
CLN3-241ENST00000635861 FEN1P39748 380 aaKnown RBP16.8■□□□□ 0.28
CLN3-241ENST00000635861 KRT6CP48668 564 aa16.8■□□□□ 0.28
CLN3-241ENST00000635861 RASA2Q15283 850 aa16.8■□□□□ 0.28
CLN3-241ENST00000635861 FAM111BQ6SJ93 734 aa16.8■□□□□ 0.28
CLN3-241ENST00000635861 ENPP6Q6UWR7 440 aa16.8■□□□□ 0.28
CLN3-241ENST00000635861 ANGPTL8Q6UXH0 198 aa16.8■□□□□ 0.28
CLN3-241ENST00000635861 GBP7Q8N8V2 638 aaPredicted RBP16.8■□□□□ 0.28
CLN3-241ENST00000635861 FAM83FQ8NEG4 500 aaPredicted RBP16.8■□□□□ 0.28
CLN3-241ENST00000635861 GOT1L1Q8NHS2 421 aaPredicted RBP16.8■□□□□ 0.28
CLN3-241ENST00000635861 TRIB1Q96RU8 372 aa16.8■□□□□ 0.28
CLN3-241ENST00000635861 GPATCH1Q9BRR8 931 aaKnown RBP16.8■□□□□ 0.28
CLN3-241ENST00000635861 FARSBQ9NSD9 589 aaKnown RBP16.8■□□□□ 0.28
CLN3-241ENST00000635861 KLRF1Q9NZS2 232 aa16.8■□□□□ 0.28
CLN3-241ENST00000635861 FLNAP21333 2647 aaKnown RBP16.8■□□□□ 0.28
CLN3-241ENST00000635861 FRG2CA6NGY1 282 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 OR6C70A6NIJ9 312 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 TRIM49D1C9J1S8 452 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 GNB5O14775 395 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 ICOSLGO75144 302 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 CBX7O95931 251 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 SNRPAP09012 282 aaKnown RBP16.79■□□□□ 0.28
CLN3-241ENST00000635861 DRD2P14416 443 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 TAC1P20366 129 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 GSTM5P46439 218 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 CLCQ05315 142 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 EIPR1Q53HC9 387 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 SGO1Q5FBB7 561 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 WIPI1Q5MNZ9 446 aaPredicted RBP16.79■□□□□ 0.28
CLN3-241ENST00000635861 UBAP2Q5T6F2 1119 aaKnown RBP16.79■□□□□ 0.28
CLN3-241ENST00000635861 TMEM151AQ8N4L1 468 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 TMCO6Q96DC7 493 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 MTBPQ96DY7 904 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 CNRIP1Q96F85 164 aaPredicted RBP16.79■□□□□ 0.28
CLN3-241ENST00000635861 ZNF681Q96N22 645 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 UCN2Q96RP3 112 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 RHOXF2Q9BQY4 288 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 TMUB1Q9BVT8 246 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 OR2B2Q9GZK3 357 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 ANKZF1Q9H8Y5 726 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 JKAMPQ9P055 326 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 PLLPQ9Y342 182 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 CCDC151A5D8V7 595 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 TUBAL3A6NHL2 446 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 POC1B-GALNT4F8VUJ3 575 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 SBK3P0C264 359 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 CYP4B1P13584 511 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 DNASE1P24855 282 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 HSD17B3P37058 310 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 PTGDSP41222 190 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 EMDP50402 254 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 NAGLUP54802 743 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 CDH13P55290 713 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 EEF1A1P68104 462 aaKnown RBP16.79■□□□□ 0.28
CLN3-241ENST00000635861 EXOSC7Q15024 291 aaKnown RBP16.79■□□□□ 0.28
CLN3-241ENST00000635861 ERCC6LQ2NKX8 1250 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 KRTAP21-3Q3LHN1 58 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 EEF1A1P5Q5VTE0 462 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 TIFABQ6ZNK6 161 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 CAMKMTQ7Z624 323 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 C1orf52Q8N6N3 182 aaKnown RBP16.79■□□□□ 0.28
CLN3-241ENST00000635861 OR52R1Q8NGF1 315 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 NRGNQ92686 78 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 SLC35A4Q96G79 324 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 ALPK1Q96QP1 1244 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 NODALQ96S42 347 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 ZNF382Q96SR6 550 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 TM9SF2Q99805 663 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 CCM2LQ9NUG4 571 aaPredicted RBP16.79■□□□□ 0.28
CLN3-241ENST00000635861 ZNF225Q9UK10 706 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 UTS2RQ9UKP6 389 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 CBLCQ9ULV8 474 aa16.79■□□□□ 0.28
CLN3-241ENST00000635861 GPR55Q9Y2T6 319 aaPredicted RBP16.79■□□□□ 0.28
CLN3-241ENST00000635861 MRPS18CQ9Y3D5 142 aaKnown RBP16.79■□□□□ 0.28
CLN3-241ENST00000635861 ACANP16112 2415 aa16.78■□□□□ 0.28
CLN3-241ENST00000635861 A0A1B0GTL3 188 aa16.78■□□□□ 0.28
CLN3-241ENST00000635861 PRAMEF25A6NGN4 478 aa16.78■□□□□ 0.28
CLN3-241ENST00000635861 UGT2B11O75310 529 aa16.78■□□□□ 0.28
CLN3-241ENST00000635861 OR4F21O95013 312 aa16.78■□□□□ 0.28
CLN3-241ENST00000635861 EPXP11678 715 aa16.78■□□□□ 0.28
CLN3-241ENST00000635861 CD99P14209 185 aa16.78■□□□□ 0.28
CLN3-241ENST00000635861 CHMP24386 653 aa16.78■□□□□ 0.28
CLN3-241ENST00000635861 TACR1P25103 407 aa16.78■□□□□ 0.28
CLN3-241ENST00000635861 SOX18P35713 384 aa16.78■□□□□ 0.28
CLN3-241ENST00000635861 ALDH9A1P49189 494 aa16.78■□□□□ 0.28
CLN3-241ENST00000635861 NNATQ16517 81 aa16.78■□□□□ 0.28
CLN3-241ENST00000635861 SPIN4Q56A73 249 aa16.78■□□□□ 0.28
CLN3-241ENST00000635861 CDC20BQ86Y33 519 aa16.78■□□□□ 0.28
CLN3-241ENST00000635861 TGIF2LYQ8IUE0 185 aa16.78■□□□□ 0.28
CLN3-241ENST00000635861 MBD6Q96DN6 1003 aa16.78■□□□□ 0.28
CLN3-241ENST00000635861 COL21A1Q96P44 957 aa16.78■□□□□ 0.28
CLN3-241ENST00000635861 BTBD9Q96Q07 612 aa16.78■□□□□ 0.28
CLN3-241ENST00000635861 SFXN3Q9BWM7 321 aa16.78■□□□□ 0.28
CLN3-241ENST00000635861 KDM4EB2RXH2 506 aaPredicted RBP16.77■□□□□ 0.27
CLN3-241ENST00000635861 MANBAO00462 879 aa16.77■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms