RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 MRPS30Q9NP92 439 aaKnown RBP12□□□□□ -0.49
LINC00540-203ENST00000631321 RWDD3Q9Y3V2 267 aa12□□□□□ -0.49
LINC00540-203ENST00000631321 OR1A2Q9Y585 309 aa12□□□□□ -0.49
LINC00540-203ENST00000631321 SPIN1Q9Y657 262 aaPredicted RBP12□□□□□ -0.49
LINC00540-203ENST00000631321 KCNE3Q9Y6H6 103 aa12□□□□□ -0.49
LINC00540-203ENST00000631321 NINQ8N4C6 2090 aa12□□□□□ -0.49
LINC00540-203ENST00000631321 ANTXRLA6NF34 631 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 C5orf67F2Z3F1 127 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 EMC8O43402 210 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 ERAL1O75616 437 aaKnown RBP11.99□□□□□ -0.49
LINC00540-203ENST00000631321 CYP7B1O75881 506 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 TSPAN19P0C672 248 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 CSNK2A2P19784 350 aaPredicted RBP11.99□□□□□ -0.49
LINC00540-203ENST00000631321 TSFMP43897 325 aaKnown RBP11.99□□□□□ -0.49
LINC00540-203ENST00000631321 SLC9A3P48764 834 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 TGM4P49221 684 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 ASAH1Q13510 395 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 TRAM2Q15035 370 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 IRF4Q15306 451 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 ZNF750Q32MQ0 723 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 SLC48A1Q6P1K1 146 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 XKRXQ6PP77 449 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 CD200R1LQ6Q8B3 271 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 PRR23CQ6ZRP0 262 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 CCDC116Q8IYX3 515 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 ZNF485Q8NCK3 441 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 OR2L5Q8NG80 312 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 OR8D4Q8NGM9 314 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 KIAA1143Q96AT1 154 aaPredicted RBP11.99□□□□□ -0.49
LINC00540-203ENST00000631321 C16orf58Q96GQ5 468 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 KCTD7Q96MP8 289 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 EGLN3Q9H6Z9 239 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 ENTPD4Q9Y227 616 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 LIPT1Q9Y234 373 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 CARD8Q9Y2G2 431 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 MYO7AQ13402 2215 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 RGS13O14921 159 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 MID1O15344 667 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 PCDH8O95206 1070 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 MTNR1AP48039 350 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 PRR5P85299 388 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 IFITM2Q01629 132 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 HNRNPA0Q13151 305 aaKnown RBP11.99□□□□□ -0.49
LINC00540-203ENST00000631321 GPAT3Q53EU6 434 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 ARMC4Q5T2S8 1044 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 NXNL2Q5VZ03 156 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 C22orf42Q6IC83 251 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 TMEM107Q6UX40 140 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 PRICKLE2Q7Z3G6 844 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 GDPD1Q8N9F7 314 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 NEDD4LQ96PU5 975 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 SLC38A2Q96QD8 506 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 OR7D2Q96RA2 312 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 NEK6Q9HC98 313 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 ABCB9Q9NP78 766 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 PHPT1Q9NRX4 125 aaPredicted RBP11.99□□□□□ -0.49
LINC00540-203ENST00000631321 OBP2AQ9NY56 170 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 CALML5Q9NZT1 146 aa11.99□□□□□ -0.49
LINC00540-203ENST00000631321 MKI67P46013 3256 aaKnown RBP11.98□□□□□ -0.49
LINC00540-203ENST00000631321 A0A1W2PQ09 198 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 LINC01553A4QN01 128 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 FAM170BA6NMN3 283 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 A8MU76 341 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 KCNJ13O60928 360 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 CLEC2LP0C7M8 214 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 TRAPPC2P0DI81 140 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 TRAPPC2BP0DI82 140 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 GAAP10253 952 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 FGF9P31371 208 aaPredicted RBP11.98□□□□□ -0.49
LINC00540-203ENST00000631321 GABRA5P31644 462 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 NR4A2P43354 598 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 RPS5P46782 204 aaKnown RBP11.98□□□□□ -0.49
LINC00540-203ENST00000631321 OMPP47874 163 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 TAS2R41P59536 307 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 RPS25P62851 125 aaKnown RBP11.98□□□□□ -0.49
LINC00540-203ENST00000631321 FGL2Q14314 439 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 ZNF311Q5JNZ3 666 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 OR2G6Q5TZ20 316 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 PPP2R2DQ66LE6 453 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 ZNF517Q6ZMY9 492 aaPredicted RBP11.98□□□□□ -0.49
LINC00540-203ENST00000631321 SPRED2Q7Z698 418 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 HMGN2P46Q86SG4 172 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 SRFBP1Q8NEF9 429 aaKnown RBP11.98□□□□□ -0.49
LINC00540-203ENST00000631321 ANKK1Q8NFD2 765 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 UFD1Q92890 307 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 ZNF681Q96N22 645 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 ARHGAP9Q9BRR9 750 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 PRRG3Q9BZD7 231 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 BTBD1Q9H0C5 482 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 RSPH9Q9H1X1 276 aaPredicted RBP11.98□□□□□ -0.49
LINC00540-203ENST00000631321 OSGEPL1Q9H4B0 414 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 POLMQ9NP87 494 aaPredicted RBP11.98□□□□□ -0.49
LINC00540-203ENST00000631321 ZDHHC4Q9NPG8 344 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 IMP3Q9NV31 184 aaKnown RBP11.98□□□□□ -0.49
LINC00540-203ENST00000631321 CHST2Q9Y4C5 530 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 A0A1W2PQL4 384 aaPredicted RBP11.98□□□□□ -0.49
LINC00540-203ENST00000631321 SLC30A4O14863 429 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 ALPPP05187 535 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 LIMS3P0CW19 117 aa11.98□□□□□ -0.49
LINC00540-203ENST00000631321 LIMS4P0CW20 117 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms