RNA–Protein interactions for RNA: ENST00000618500.4

SNCA-213, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,022 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-213ENST00000618500 ACTR6Q9GZN1 396 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 DDX31Q9H8H2 851 aaKnown RBP4.09□□□□□ -1.75
SNCA-213ENST00000618500 CNOT10Q9H9A5 744 aaKnown RBP4.09□□□□□ -1.75
SNCA-213ENST00000618500 LIN28AQ9H9Z2 209 aaKnown RBP4.09□□□□□ -1.75
SNCA-213ENST00000618500 CXorf21Q9HAI6 301 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 HOMER3Q9NSC5 361 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 PIH1D1Q9NWS0 290 aaKnown RBP4.09□□□□□ -1.75
SNCA-213ENST00000618500 TEX10Q9NXF1 929 aaPredicted RBP4.09□□□□□ -1.75
SNCA-213ENST00000618500 TAS2R10Q9NYW0 307 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 ASIC3Q9UHC3 531 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 FBXO5Q9UKT4 447 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 ZNF490Q9ULM2 529 aaPredicted RBP4.09□□□□□ -1.75
SNCA-213ENST00000618500 LIPT1Q9Y234 373 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 ZNF407Q9C0G0 2248 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 GRID2IPA4D2P6 1211 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 ANKDD1BA6NHY2 528 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 UGDHO60701 494 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 ATP1B1P05026 303 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 APRTP07741 180 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 KRT15P19012 456 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 COX5AP20674 150 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 CPN2P22792 545 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 BUD31P41223 144 aaPredicted RBP4.09□□□□□ -1.75
SNCA-213ENST00000618500 PPICP45877 212 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 PDLIM4P50479 330 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 NUDT6P53370 316 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 CUL3Q13618 768 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 RBBP5Q15291 538 aaKnown RBP4.09□□□□□ -1.75
SNCA-213ENST00000618500 SWI5Q1ZZU3 235 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 OR4C11Q6IEV9 310 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 MBOAT1Q6ZNC8 495 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 DGAT2L6Q6ZPD8 337 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 STK32CQ86UX6 486 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 GABRG1Q8N1C3 465 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.09□□□□□ -1.75
SNCA-213ENST00000618500 PDPRQ8NCN5 879 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 OR14L1PQ8NHC6 308 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 FAM168AQ92567 244 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 COL21A1Q96P44 957 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 GNRHR2Q96P88 292 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 KRT12Q99456 494 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 PIMREGQ9BSJ6 248 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 NAT9Q9BTE0 207 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 RSPO3Q9BXY4 272 aaPredicted RBP4.09□□□□□ -1.75
SNCA-213ENST00000618500 RPF2Q9H7B2 306 aaKnown RBP4.09□□□□□ -1.75
SNCA-213ENST00000618500 METTL7AQ9H8H3 244 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 PRODH2Q9UF12 536 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 ASB4Q9Y574 426 aa4.09□□□□□ -1.75
SNCA-213ENST00000618500 CTAGE15A4D2H0 777 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 SDR42E2A6NKP2 422 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 TTC36A6NLP5 189 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 RGS14O43566 566 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 ADAM11O75078 769 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 PLAUP00749 431 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 TUBBP07437 444 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 NGFRP08138 427 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 ZNF23P17027 643 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 HIVEP2P31629 2446 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 GP5P40197 560 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 NR4A2P43354 598 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 PNLIPRP2P54317 469 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 CLDN15P56746 228 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 HERVK_113P63132 956 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 ERVK-8P63133 956 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 CUL1Q13616 776 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 RNPS1Q15287 305 aaKnown RBP4.08□□□□□ -1.76
SNCA-213ENST00000618500 C4orf48Q5BLP8 95 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 SPANXN3Q5MJ09 141 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 KHDRBS2Q5VWX1 349 aaKnown RBP4.08□□□□□ -1.76
SNCA-213ENST00000618500 GRHL2Q6ISB3 625 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 C22orf34Q6ZV56 151 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 ZNF550Q7Z398 422 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 YRDCQ86U90 279 aaKnown RBP4.08□□□□□ -1.76
SNCA-213ENST00000618500 CTAGE6Q86UF2 777 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 GGNQ86UU5 652 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 GPR180Q86V85 440 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 GPSM1Q86YR5 675 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 GALNT12Q8IXK2 581 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 OTUD6BQ8N6M0 293 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 CCDC89Q8N998 374 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 ZNF473Q8WTR7 871 aaKnown RBP4.08□□□□□ -1.76
SNCA-213ENST00000618500 RGMAQ96B86 450 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 RBM18Q96H35 190 aaKnown RBP4.08□□□□□ -1.76
SNCA-213ENST00000618500 NODALQ96S42 347 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 PIGQQ9BRB3 760 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 ERVK-6Q9BXR3 956 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 PHACTR1Q9C0D0 580 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 OR10A5Q9H207 317 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 STOML1Q9UBI4 398 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 HEY2Q9UBP5 337 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 DKKL1Q9UK85 242 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 LAMP3Q9UQV4 416 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 ERVK-19Q9WJR5 959 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 FKBP7Q9Y680 259 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.08□□□□□ -1.76
SNCA-213ENST00000618500 RTTNQ86VV8 2226 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 TRIM77I1YAP6 450 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 FOXE1O00358 373 aaPredicted RBP4.08□□□□□ -1.76
SNCA-213ENST00000618500 NR2F6P10588 404 aa4.08□□□□□ -1.76
SNCA-213ENST00000618500 PGAM1P18669 254 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms