RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 SNUPNO95149 360 aaKnown RBP12.41□□□□□ -0.42
LINC00540-202ENST00000616974 PRPS1L1P21108 318 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 NME2P22392 152 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 HPCAL1P37235 193 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 CDKN2CP42773 168 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 GSTM5P46439 218 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 RNF144AP50876 292 aaPredicted RBP12.41□□□□□ -0.42
LINC00540-202ENST00000616974 AP2B1P63010 937 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 HSF1Q00613 529 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 RGS9BPQ6ZS82 235 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 ZAR1Q86SH2 424 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 MIB2Q96AX9 1013 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 EFHD2Q96C19 240 aaPredicted RBP12.41□□□□□ -0.42
LINC00540-202ENST00000616974 SPACA9Q96E40 222 aaPredicted RBP12.41□□□□□ -0.42
LINC00540-202ENST00000616974 ART5Q96L15 291 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 FRMD6Q96NE9 622 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 INPP5KQ9BT40 448 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 RTN4RQ9BZR6 473 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 DPY30Q9C005 99 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 ACBD3Q9H3P7 528 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 SERHL2Q9H4I8 314 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 SH2D2AQ9NP31 389 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 DDX18Q9NVP1 670 aaKnown RBP12.41□□□□□ -0.42
LINC00540-202ENST00000616974 C19orf53Q9UNZ5 99 aaPredicted RBP12.41□□□□□ -0.42
LINC00540-202ENST00000616974 GPR55Q9Y2T6 319 aaPredicted RBP12.41□□□□□ -0.42
LINC00540-202ENST00000616974 SNX8Q9Y5X2 465 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 KCNE3Q9Y6H6 103 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 CSMD1Q96PZ7 3565 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 A0A1W2PRB8 838 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 TRPC5OSA6NMA1 111 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 UGT2B11O75310 529 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 ERN1O75460 977 aaKnown RBP12.41□□□□□ -0.42
LINC00540-202ENST00000616974 IGKV1D-16P01601 117 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 GPC1P35052 558 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 ZNF155Q12901 538 aaPredicted RBP12.41□□□□□ -0.42
LINC00540-202ENST00000616974 GAB1Q13480 694 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 SLC25A25Q6KCM7 469 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 LRRC34Q8IZ02 419 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 SLC16A11Q8NCK7 471 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 OR7G1Q8NGA0 311 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 OR5L2Q8NGL0 311 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 ACTRT2Q8TDY3 377 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 VPS33AQ96AX1 596 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 NODALQ96S42 347 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 BARD1Q99728 777 aaKnown RBP12.41□□□□□ -0.42
LINC00540-202ENST00000616974 CLMPQ9H6B4 373 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 GALNT9Q9HCQ5 603 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 MED4Q9NPJ6 270 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 TCF7L2Q9NQB0 619 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 WBP11Q9Y2W2 641 aaKnown RBP12.41□□□□□ -0.42
LINC00540-202ENST00000616974 NPFFR2Q9Y5X5 522 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 COPG1Q9Y678 874 aaKnown RBP12.41□□□□□ -0.42
LINC00540-202ENST00000616974 CACNA1CQ13936 2221 aa12.41□□□□□ -0.42
LINC00540-202ENST00000616974 PLOD2O00469 737 aa12.4□□□□□ -0.42
LINC00540-202ENST00000616974 ZIC2O95409 532 aaPredicted RBP12.4□□□□□ -0.42
LINC00540-202ENST00000616974 CELA3AP09093 270 aa12.4□□□□□ -0.42
LINC00540-202ENST00000616974 FBXO45P0C2W1 286 aa12.4□□□□□ -0.42
LINC00540-202ENST00000616974 RFPL3SP0C7P2 107 aa12.4□□□□□ -0.42
LINC00540-202ENST00000616974 RFX3P48380 749 aa12.4□□□□□ -0.42
LINC00540-202ENST00000616974 MEOX1P50221 254 aa12.4□□□□□ -0.42
LINC00540-202ENST00000616974 HSP90B2PQ58FF3 399 aa12.4□□□□□ -0.42
LINC00540-202ENST00000616974 C6orf163Q5TEZ5 329 aa12.4□□□□□ -0.42
LINC00540-202ENST00000616974 ZNF324BQ6AW86 544 aaPredicted RBP12.4□□□□□ -0.42
LINC00540-202ENST00000616974 SLC44A2Q8IWA5 706 aaPredicted RBP12.4□□□□□ -0.42
LINC00540-202ENST00000616974 OMA1Q96E52 524 aa12.4□□□□□ -0.42
LINC00540-202ENST00000616974 ZNF764Q96H86 408 aaPredicted RBP12.4□□□□□ -0.42
LINC00540-202ENST00000616974 LCORQ96JN0 433 aaPredicted RBP12.4□□□□□ -0.42
LINC00540-202ENST00000616974 TNFRSF10DQ9UBN6 386 aa12.4□□□□□ -0.42
LINC00540-202ENST00000616974 A0A0G2JND7 137 aa12.4□□□□□ -0.43
LINC00540-202ENST00000616974 OR6C76A6NM76 312 aa12.4□□□□□ -0.43
LINC00540-202ENST00000616974 GSNP06396 782 aa12.4□□□□□ -0.43
LINC00540-202ENST00000616974 ACP2P11117 423 aa12.4□□□□□ -0.43
LINC00540-202ENST00000616974 GNLYP22749 145 aa12.4□□□□□ -0.43
LINC00540-202ENST00000616974 TDGF1P3P51864 188 aa12.4□□□□□ -0.43
LINC00540-202ENST00000616974 C21orf58P58505 322 aa12.4□□□□□ -0.43
LINC00540-202ENST00000616974 MAD2L1Q13257 205 aaPredicted RBP12.4□□□□□ -0.43
LINC00540-202ENST00000616974 GTDC1Q4AE62 458 aa12.4□□□□□ -0.43
LINC00540-202ENST00000616974 CCNJQ5T5M9 372 aa12.4□□□□□ -0.43
LINC00540-202ENST00000616974 DNAJC14Q6Y2X3 702 aaPredicted RBP12.4□□□□□ -0.43
LINC00540-202ENST00000616974 FUNDC1Q8IVP5 155 aa12.4□□□□□ -0.43
LINC00540-202ENST00000616974 NUP43Q8NFH3 380 aa12.4□□□□□ -0.43
LINC00540-202ENST00000616974 OR52N2Q8NGI0 321 aa12.4□□□□□ -0.43
LINC00540-202ENST00000616974 OR5D16Q8NGK9 328 aa12.4□□□□□ -0.43
LINC00540-202ENST00000616974 MTERF3Q96E29 417 aa12.4□□□□□ -0.43
LINC00540-202ENST00000616974 ZBED6CLQ96FA7 236 aaPredicted RBP12.4□□□□□ -0.43
LINC00540-202ENST00000616974 BTBD9Q96Q07 612 aa12.4□□□□□ -0.43
LINC00540-202ENST00000616974 RABEP2Q9H5N1 569 aa12.4□□□□□ -0.43
LINC00540-202ENST00000616974 ABI3Q9P2A4 366 aa12.4□□□□□ -0.43
LINC00540-202ENST00000616974 ITPR2Q14571 2701 aa12.39□□□□□ -0.43
LINC00540-202ENST00000616974 ASPDHA6ND91 283 aa12.39□□□□□ -0.43
LINC00540-202ENST00000616974 FAM166BA8MTA8 275 aa12.39□□□□□ -0.43
LINC00540-202ENST00000616974 ADAM10O14672 748 aa12.39□□□□□ -0.43
LINC00540-202ENST00000616974 UBDO15205 165 aa12.39□□□□□ -0.43
LINC00540-202ENST00000616974 PEX1O43933 1283 aa12.39□□□□□ -0.43
LINC00540-202ENST00000616974 HS6ST1O60243 411 aa12.39□□□□□ -0.43
LINC00540-202ENST00000616974 CPSF4O95639 269 aaKnown RBP12.39□□□□□ -0.43
LINC00540-202ENST00000616974 HMGN2P05204 90 aaKnown RBP12.39□□□□□ -0.43
LINC00540-202ENST00000616974 KCNK10P57789 538 aa12.39□□□□□ -0.43
LINC00540-202ENST00000616974 FOXK1P85037 733 aa12.39□□□□□ -0.43
LINC00540-202ENST00000616974 SRSF1Q07955 248 aaKnown RBP eCLIP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms