RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 B3GALT1Q9Y5Z6 326 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 DSPPQ9NZW4 1301 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 FAM149AA5PLN7 773 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 C17orf105B2RV13 164 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 PROB1E7EW31 1015 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 TMX2-CTNND1H3BSU7 103 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 SUV39H1O43463 412 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 CSO75390 466 aaKnown RBP13.28□□□□□ -0.28
USP39-220ENST00000613444 MT-CO3P00414 261 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 IFNA16P05015 189 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 FASP25445 335 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 VHLP40337 213 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 TRIP10Q15642 601 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 NSDHLQ15738 373 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 ATP6AP1Q15904 470 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 PRAMEF8Q5VWM4 474 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 PRAMEF7Q5VXH5 474 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 SHISA6Q6ZSJ9 500 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 RAB11FIP2Q7L804 512 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 SLC9A6Q92581 669 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 VSTM2LQ96N03 204 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 TRNT1Q96Q11 434 aaKnown RBP13.28□□□□□ -0.28
USP39-220ENST00000613444 STACQ99469 402 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 SPSB2Q99619 263 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 LMF2Q9BU23 707 aaKnown RBP13.28□□□□□ -0.28
USP39-220ENST00000613444 SLC38A1Q9H2H9 487 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 DUSP22Q9NRW4 184 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 C14orf105Q9NVL8 296 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 ADPRHL2Q9NX46 363 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 LIPT1Q9Y234 373 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 DTX4Q9Y2E6 619 aa13.28□□□□□ -0.28
USP39-220ENST00000613444 HEMK1Q9Y5R4 338 aaPredicted RBP13.28□□□□□ -0.28
USP39-220ENST00000613444 GPC6Q9Y625 555 aaPredicted RBP13.28□□□□□ -0.28
USP39-220ENST00000613444 SDK2Q58EX2 2172 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 FAM186AA6NE01 2351 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 PRAMEF25A6NGN4 478 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 A8MVJ9 347 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 COQ9O75208 318 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 PRSS23O95084 383 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 H6PDO95479 791 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 DDAH2O95865 285 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 ALBP02768 609 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 FCGR1AP12314 374 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 CD247P20963 164 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 PGDP52209 483 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 CRISP3P54108 245 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 VLDLRP98155 873 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 PSG6Q00889 435 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 OCA2Q04671 838 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 ELAVL1Q15717 326 aaKnown RBP13.27□□□□□ -0.28
USP39-220ENST00000613444 DUSP7Q16829 419 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 TSEN54Q7Z6J9 526 aaKnown RBP13.27□□□□□ -0.28
USP39-220ENST00000613444 KBTBD2Q8IY47 623 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 C7orf57Q8NEG2 295 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 DEFB124Q8NES8 71 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 FKBP10Q96AY3 582 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 SENP5Q96HI0 755 aaPredicted RBP13.27□□□□□ -0.28
USP39-220ENST00000613444 C7orf34Q96L11 122 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 CNPPD1Q9BV87 410 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 NTN4Q9HB63 628 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 FOLH1BQ9HBA9 442 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 IL1RAPQ9NPH3 570 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 PNO1Q9NRX1 252 aaKnown RBP13.27□□□□□ -0.28
USP39-220ENST00000613444 AKAP7Q9P0M2 348 aaPredicted RBP13.27□□□□□ -0.28
USP39-220ENST00000613444 IFT80Q9P2H3 777 aaPredicted RBP13.27□□□□□ -0.28
USP39-220ENST00000613444 PCDHGA8Q9Y5G5 932 aa13.27□□□□□ -0.28
USP39-220ENST00000613444 CNOT1A5YKK6 2376 aaKnown RBP13.27□□□□□ -0.29
USP39-220ENST00000613444 TMEM247A6NEH6 219 aa13.27□□□□□ -0.29
USP39-220ENST00000613444 NKX2-2O95096 273 aa13.27□□□□□ -0.29
USP39-220ENST00000613444 AGR2O95994 175 aa13.27□□□□□ -0.29
USP39-220ENST00000613444 IGKV3-11P04433 115 aa13.27□□□□□ -0.29
USP39-220ENST00000613444 HOXB6P17509 224 aaKnown RBP13.27□□□□□ -0.29
USP39-220ENST00000613444 RAB15P59190 212 aa13.27□□□□□ -0.29
USP39-220ENST00000613444 ARHGAP11BQ3KRB8 267 aa13.27□□□□□ -0.29
USP39-220ENST00000613444 LANCL3Q6ZV70 420 aa13.27□□□□□ -0.29
USP39-220ENST00000613444 ZNF321PQ8N8H1 164 aa13.27□□□□□ -0.29
USP39-220ENST00000613444 SMYD1Q8NB12 490 aa13.27□□□□□ -0.29
USP39-220ENST00000613444 CHDHQ8NE62 594 aaPredicted RBP13.27□□□□□ -0.29
USP39-220ENST00000613444 GPR32P1Q8NGA4 272 aa13.27□□□□□ -0.29
USP39-220ENST00000613444 C16orf52Q8NHV5 167 aa13.27□□□□□ -0.29
USP39-220ENST00000613444 BBS10Q8TAM1 723 aa13.27□□□□□ -0.29
USP39-220ENST00000613444 APOBEC4Q8WW27 367 aaKnown RBP13.27□□□□□ -0.29
USP39-220ENST00000613444 CENPNQ96H22 339 aaPredicted RBP13.27□□□□□ -0.29
USP39-220ENST00000613444 FBXL20Q96IG2 436 aa13.27□□□□□ -0.29
USP39-220ENST00000613444 TPD52L3Q96J77 140 aa13.27□□□□□ -0.29
USP39-220ENST00000613444 MESP1Q9BRJ9 268 aa13.27□□□□□ -0.29
USP39-220ENST00000613444 ULBP3Q9BZM4 244 aa13.27□□□□□ -0.29
USP39-220ENST00000613444 OR10A5Q9H207 317 aa13.27□□□□□ -0.29
USP39-220ENST00000613444 SOX17Q9H6I2 414 aaPredicted RBP13.27□□□□□ -0.29
USP39-220ENST00000613444 A0A0G2JPF8 293 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 TEX51A0A1B0GUA7 166 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 LOC105378220A0A1B0GUY1 285 aaPredicted RBP13.26□□□□□ -0.29
USP39-220ENST00000613444 A8MUA0 341 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 HNRNPCL2B2RXH8 293 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 IDSB3KWA1 339 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 HNRNPCL3B7ZW38 293 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 FCMRO60667 390 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 PRAMEF2O60811 474 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 PDE9AO76083 593 aa13.26□□□□□ -0.29
USP39-220ENST00000613444 ALOX5P09917 674 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms