RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 CPSF6Q16630 551 aaKnown RBP eCLIP5.52□□□□□ -1.53
VRK3-220ENST00000600259 TRMT12Q53H54 448 aaKnown RBP5.52□□□□□ -1.53
VRK3-220ENST00000600259 CT45A2Q5DJT8 189 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 HLA-DQA1Q5Y7H0 255 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 OR52E8Q6IFG1 317 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 CYP20A1Q6UW02 462 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 ENPP6Q6UWR7 440 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 ZNF550Q7Z398 422 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 CMC1Q7Z7K0 106 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 PLCZ1Q86YW0 608 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 KLHL7Q8IXQ5 586 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 ZBED8Q8IZ13 594 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 CENPLQ8N0S6 344 aaPredicted RBP5.52□□□□□ -1.53
VRK3-220ENST00000600259 ZNF454Q8N9F8 522 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 RHEBL1Q8TAI7 183 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 RDH11Q8TC12 318 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 FIG4Q92562 907 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 EXT2Q93063 718 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 OMA1Q96E52 524 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 PIK3IP1Q96FE7 263 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 PERPQ96FX8 193 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 LCORQ96JN0 433 aaPredicted RBP5.52□□□□□ -1.53
VRK3-220ENST00000600259 CPNE1Q99829 537 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 OSBPL11Q9BXB4 747 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 ITPAQ9BY32 194 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 OPN3Q9H1Y3 402 aaPredicted RBP5.52□□□□□ -1.53
VRK3-220ENST00000600259 METTL7AQ9H8H3 244 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 ACTR8Q9H981 624 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 WDR41Q9HAD4 459 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 NMRAL1Q9HBL8 299 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 TAS2R10Q9NYW0 307 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 MAPRE3Q9UPY8 281 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 GPR55Q9Y2T6 319 aaPredicted RBP5.52□□□□□ -1.53
VRK3-220ENST00000600259 ACOT9Q9Y305 439 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 SNX24Q9Y343 169 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 PCDHA9Q9Y5H5 950 aa5.52□□□□□ -1.53
VRK3-220ENST00000600259 RAI1Q7Z5J4 1906 aaPredicted RBP5.51□□□□□ -1.53
VRK3-220ENST00000600259 PRAMEF25A6NGN4 478 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 OR6C70A6NIJ9 312 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 SUPT3HB4E1H0 165 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 H0Y3Z8 333 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 H0YC42 278 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 OR7A17O14581 309 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 EMC8O43402 210 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 NME6O75414 186 aaPredicted RBP5.51□□□□□ -1.53
VRK3-220ENST00000600259 SUPT3HO75486 399 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 TNFRSF21O75509 655 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 SIX3O95343 332 aaPredicted RBP5.51□□□□□ -1.53
VRK3-220ENST00000600259 PLAUP00749 431 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 C2P06681 752 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 KLK1P06870 262 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 THBS1P07996 1170 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 LTA4HP09960 611 aaKnown RBP5.51□□□□□ -1.53
VRK3-220ENST00000600259 CD8BP10966 210 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 NT5EP21589 574 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 SPRP35270 261 aaPredicted RBP5.51□□□□□ -1.53
VRK3-220ENST00000600259 FEN1P39748 380 aaKnown RBP5.51□□□□□ -1.53
VRK3-220ENST00000600259 SUCLG1P53597 346 aaKnown RBP5.51□□□□□ -1.53
VRK3-220ENST00000600259 TPD52P55327 224 aaPredicted RBP5.51□□□□□ -1.53
VRK3-220ENST00000600259 DR1Q01658 176 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 GUCY2DQ02846 1103 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 TNK1Q13470 666 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 GTF2H2Q13888 395 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 NNATQ16517 81 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 PFKFB4Q16877 469 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 GRTP1Q5TC63 336 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 ANKRD34AQ69YU3 496 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 SLC48A1Q6P1K1 146 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 GTF2H2CQ6P1K8 395 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 C20orf204Q6ZNR8 217 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 C3orf62Q6ZUJ4 267 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 SH2D5Q6ZV89 423 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 GOLGA7Q7Z5G4 137 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 IFNEQ86WN2 208 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 NUDT13Q86X67 352 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 GRAMD2AQ8IUY3 354 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 METTL4Q8N3J2 472 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 FADS6Q8N9I5 356 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 ZNF610Q8N9Z0 462 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 ADCY4Q8NFM4 1077 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 OR14L1PQ8NHC6 308 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 TRPC4APQ8TEL6 797 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 PYROXD1Q8WU10 500 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 KCTD4Q8WVF5 259 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 TMBIM1Q969X1 311 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 TM4SF18Q96CE8 201 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 CNRIP1Q96F85 164 aaPredicted RBP5.51□□□□□ -1.53
VRK3-220ENST00000600259 PGM2Q96G03 612 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 SLC35A4Q96G79 324 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 SERPINI1Q99574 410 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 CCL19Q99731 98 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 CENPKQ9BS16 269 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 TMEM204Q9BSN7 226 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 LRRC1Q9BTT6 524 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 NTMT1Q9BV86 223 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 REPIN1Q9BWE0 567 aaKnown RBP5.51□□□□□ -1.53
VRK3-220ENST00000600259 MRPL1Q9BYD6 325 aaKnown RBP5.51□□□□□ -1.53
VRK3-220ENST00000600259 RTN4RQ9BZR6 473 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 TRIM31Q9BZY9 425 aa5.51□□□□□ -1.53
VRK3-220ENST00000600259 ACBD3Q9H3P7 528 aa5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms