RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 ABCB1P08183 1280 aaPredicted RBP17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 GNLYP22749 145 aa17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 RPL3P39023 403 aaKnown RBP17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 FBXW4P57775 412 aa17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 GPR85P60893 370 aa17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 DCAF7P61962 342 aa17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 SRSF1Q07955 248 aaKnown RBP eCLIP17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 CPTPQ5TA50 214 aa17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 FAM180AQ6UWF9 173 aa17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 SPATA19Q7Z5L4 167 aa17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 CHERPQ8IWX8 916 aaKnown RBP17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 DND1Q8IYX4 353 aaKnown RBP17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 OR8J2Q8NGG1 315 aa17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 TMEM125Q96AQ2 219 aa17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 TESCQ96BS2 214 aa17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 HSPBAP1Q96EW2 488 aa17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 LMF2Q9BU23 707 aaKnown RBP17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 BHLHE41Q9C0J9 482 aaPredicted RBP17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 ACBD3Q9H3P7 528 aa17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 CLMPQ9H6B4 373 aa17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 TIMMDC1Q9NPL8 285 aa17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 ZNF407Q9C0G0 2248 aa17.94■□□□□ 0.46
SHKBP1-221ENST00000599833 CLEC18AA5D8T8 446 aa17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 ACOX3O15254 700 aa17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 ATP8B1O43520 1251 aa17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 TSPAN2O60636 221 aa17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 ERN1O75460 977 aaKnown RBP17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 MEOX1P50221 254 aa17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 UFM1P61960 85 aa17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 LSM12Q3MHD2 195 aaKnown RBP17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 CLEC18BQ6UXF7 455 aa17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 WDR53Q7Z5U6 358 aaPredicted RBP17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 TAGAPQ8N103 731 aa17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 FBXW8Q8N3Y1 598 aa17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 CLEC18CQ8NCF0 446 aa17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 ST6GALNAC3Q8NDV1 305 aa17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 OR2M7Q8NG81 312 aa17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 OR4N2Q8NGD1 307 aa17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 FAM120BQ96EK7 910 aaKnown RBP17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 EBF4Q9BQW3 602 aa17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 CXorf36Q9H7Y0 433 aa17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 OLAHQ9NV23 265 aa17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 DDX18Q9NVP1 670 aaKnown RBP17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 TAS2R9Q9NYW1 312 aa17.93■□□□□ 0.46
SHKBP1-221ENST00000599833 A0A1W2PRB8 838 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 G3V3Y1 287 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 COQ9O75208 318 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 PPM1BO75688 479 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 C6orf47O95873 294 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 EDN3P14138 238 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 NAGAP17050 411 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 CNR1P21554 472 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 RFC3P40938 356 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 PTGDSP41222 190 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 IDH3AP50213 366 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 MANFP55145 182 aaKnown RBP17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 RPS6KA2Q15349 733 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 HLA-DQA1Q5Y7H0 255 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 BICRALQ6AI39 1079 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 OR4F3Q6IEY1 312 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 FAM47EQ6ZV65 393 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 SPPL2AQ8TCT8 520 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 DYDC1Q8WWB3 177 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 OR5P2Q8WZ92 322 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 OMA1Q96E52 524 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 DUSP26Q9BV47 211 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 AGPAT4Q9NRZ5 378 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 HRH3Q9Y5N1 445 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 NBPF19A0A087WUL8 3843 aa17.92■□□□□ 0.46
SHKBP1-221ENST00000599833 EDF1O60869 148 aaKnown RBP17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 UGT2B11O75310 529 aa17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 PIGAP37287 484 aa17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 DNASE1L1P49184 302 aa17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 HBA1P69905 142 aa17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 HYAL4Q2M3T9 481 aa17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 SPANXN4Q5MJ08 99 aa17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 FNDC7Q5VTL7 733 aa17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 SLC22A10Q63ZE4 541 aa17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 TMEM81Q6P7N7 255 aa17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 CLECL1Q8IZS7 167 aa17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 SLC34A3Q8N130 599 aa17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 NATD1Q8N6N6 113 aa17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 ZFP28Q8NHY6 868 aa17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 SLC35A4Q96G79 324 aa17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 MAGED4Q96JG8 741 aa17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 MARK4Q96L34 752 aa17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 NODALQ96S42 347 aa17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 MED4Q9NPJ6 270 aa17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 SDR39U1Q9NRG7 319 aaPredicted RBP17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 SACM1LQ9NTJ5 587 aa17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 ATAD3AQ9NVI7 634 aa17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 UTP20O75691 2785 aaKnown RBP17.91■□□□□ 0.46
SHKBP1-221ENST00000599833 FREM3P0C091 2139 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 GTF3C1Q12789 2109 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 DNAJC13O75165 2243 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 ANKRD33BA6NCL7 494 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 LRRC3CA6NJW4 275 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 B4DXG7 233 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 C9JVG2 144 aa17.9■□□□□ 0.46
SHKBP1-221ENST00000599833 KLRC4-KLRK1H3BQV0 150 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms