RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 PRODH2Q9UF12 536 aa13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 CNOT11Q9UKZ1 510 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-217ENST00000598558 GXYLT2A0PJZ3 443 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 FRG2CA6NGY1 282 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 E9PBE3 544 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 UBDO15205 165 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 ERN1O75460 977 aaKnown RBP13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 IFI6P09912 130 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 GPC1P35052 558 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 MEOX1P50221 254 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 TDGF1P3P51864 188 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 SF3A3Q12874 501 aaKnown RBP eCLIP13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 GAB1Q13480 694 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 ANKRD46Q86W74 232 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 SLC44A2Q8IWA5 706 aaPredicted RBP13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 TAGAPQ8N103 731 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 HORMAD2Q8N7B1 307 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 TMEM178AQ8NBL3 297 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 OR8J2Q8NGG1 315 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 OR9I1Q8NGQ6 314 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 PAQR8Q8TEZ7 354 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 FAR1Q8WVX9 515 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 HOXB13Q92826 284 aaPredicted RBP13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 HGDQ93099 445 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 TMBIM1Q969X1 311 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 OMA1Q96E52 524 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 OTUB1Q96FW1 271 aaPredicted RBP13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 SGCZQ96LD1 299 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 NODALQ96S42 347 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 PRPF18Q99633 342 aaKnown RBP13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 YIPF4Q9BSR8 244 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 TIMMDC1Q9NPL8 285 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 EQTNQ9NQ60 294 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 TAS2R9Q9NYW1 312 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 DCTN4Q9UJW0 460 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 CFL2Q9Y281 166 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 HRH3Q9Y5N1 445 aa13.07□□□□□ -0.32
SHKBP1-217ENST00000598558 DYNC1I1O14576 645 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 ZNHIT1O43257 154 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 EMC8O43402 210 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 TSPAN2O60636 221 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 UGT2B11O75310 529 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 PPM1BO75688 479 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 SLITRK5O94991 958 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 CBX6O95503 412 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 IGKV1D-16P01601 117 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 ACP2P11117 423 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 CNR1P21554 472 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 MDH1P40925 334 aaKnown RBP13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 UQCRFS1P47985 274 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 DNASE1L1P49184 302 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 DCAF7P61962 342 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 FOXO1Q12778 655 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 ZNF155Q12901 538 aaPredicted RBP13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 MRPL49Q13405 166 aaKnown RBP13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 FAM174BQ3ZCQ3 159 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 PDCD4Q53EL6 469 aaKnown RBP13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 PRAMEF20Q5VT98 475 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 PAOXQ6QHF9 649 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 FUNDC1Q8IVP5 155 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 SIAH3Q8IW03 269 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 ARFGAP2Q8N6H7 521 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 GOLM1Q8NBJ4 401 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 FAM13CQ8NE31 585 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 OR2M7Q8NG81 312 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 ZFP28Q8NHY6 868 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 FBXO30Q8TB52 745 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 SPPL2AQ8TCT8 520 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 TMEM125Q96AQ2 219 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 HSPBAP1Q96EW2 488 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 SLX1AQ9BQ83 275 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 LMF2Q9BU23 707 aaKnown RBP13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 CCDC28BQ9BUN5 200 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 TSPAN10Q9H1Z9 355 aaPredicted RBP13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 NPHS2Q9NP85 383 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 TCF7L2Q9NQB0 619 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 SDR39U1Q9NRG7 319 aaPredicted RBP13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 ATAD3AQ9NVI7 634 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 KCNE3Q9Y6H6 103 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 CNTRLQ7Z7A1 2325 aa13.06□□□□□ -0.32
SHKBP1-217ENST00000598558 PRSS51A0A1B0GVH4 220 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 J3QKU1 62 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 RNASET2O00584 256 aaKnown RBP13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 ADAM10O14672 748 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 ACOX3O15254 700 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 COQ9O75208 318 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 CPSF4O95639 269 aaKnown RBP13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 IDO1P14902 403 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 S100A3P33764 101 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 PTGDSP41222 190 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 KIR3DL1P43629 444 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 CCT3P49368 545 aaKnown RBP13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 GYS2P54840 703 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 GSTA3Q16772 222 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 SLC22A10Q63ZE4 541 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 MFSD12Q6NUT3 480 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 ACAD11Q709F0 780 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 SLC34A3Q8N130 599 aa13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 ZFP62Q8NB50 900 aaPredicted RBP13.05□□□□□ -0.32
SHKBP1-217ENST00000598558 SLC16A11Q8NCK7 471 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms