RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 FAM71E1Q6IPT2 247 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 ACAD11Q709F0 780 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 LIX1LQ8IVB5 337 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 C10orf107Q8IVU9 208 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 FAM9CQ8IZT9 166 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 CCDC63Q8NA47 563 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 OR7G2Q8NG99 324 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 OR2T11Q8NH01 316 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 LILRB4Q8NHJ6 448 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 CDC26Q8NHZ8 85 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.93□□□□□ -0.5
LIG1-212ENST00000596549 HSPBAP1Q96EW2 488 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 APOPT1Q96IL0 206 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 GNRHR2Q96P88 292 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 BTBD9Q96Q07 612 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 SPOCK3Q9BQ16 436 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 OSBPL11Q9BXB4 747 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 MYNNQ9NPC7 610 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 SLC35C2Q9NQQ7 365 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 PRODH2Q9UF12 536 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 Q9UFV3 132 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 ACAD8Q9UKU7 415 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 GPR55Q9Y2T6 319 aaPredicted RBP11.93□□□□□ -0.5
LIG1-212ENST00000596549 NOTCH2Q04721 2471 aa11.93□□□□□ -0.5
LIG1-212ENST00000596549 H3BQF6 201 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 SNPHO15079 494 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 SNX4O95219 450 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 DRD5P21918 477 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 PRPH2P23942 346 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 CCT5P48643 541 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 WNT3P56703 355 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 KRTAP10-9P60411 292 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 NAA20P61599 178 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 KIAA0040Q15053 153 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 EIPR1Q53HC9 387 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 SPDYAQ5MJ70 313 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 ANGPTL8Q6UXH0 198 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 MEX3BQ6ZN04 569 aaKnown RBP11.92□□□□□ -0.5
LIG1-212ENST00000596549 TRABD2AQ86V40 505 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 ULK2Q8IYT8 1036 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 LIX1Q8N485 282 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 NAXEQ8NCW5 288 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 AENQ8WTP8 325 aaKnown RBP11.92□□□□□ -0.5
LIG1-212ENST00000596549 RNF138Q8WVD3 245 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 TMBIM1Q969X1 311 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 ERP27Q96DN0 273 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 SLC35A4Q96G79 324 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 LURAP1Q96LR2 239 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 MECRQ9BV79 373 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 GATA5Q9BWX5 397 aaPredicted RBP11.92□□□□□ -0.5
LIG1-212ENST00000596549 PRDM14Q9GZV8 571 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 TUBB1Q9H4B7 451 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 RUBCNLQ9H714 662 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 METTL7AQ9H8H3 244 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 FOLH1BQ9HBA9 442 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 SLC6A5Q9Y345 797 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 PCDHGB3Q9Y5G1 929 aa11.92□□□□□ -0.5
LIG1-212ENST00000596549 MED12Q93074 2177 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 C15orf38-AP3S2A0A0A6YYH1 394 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 C2orf72A6NCS6 295 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 PRAMEF25A6NGN4 478 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 OR6C70A6NIJ9 312 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 C17orf51A8MQB3 221 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 MYO1GB0I1T2 1018 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 NPIPB8E9PQR5 432 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 PLOD3O60568 738 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 TSPAN2O60636 221 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 ICOSLGO75144 302 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 ERN1O75460 977 aaKnown RBP11.91□□□□□ -0.5
LIG1-212ENST00000596549 PSMG1O95456 288 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 JUNP05412 331 aaKnown RBP11.91□□□□□ -0.5
LIG1-212ENST00000596549 CHRNGP07510 517 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 UROSP10746 265 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 GABRA1P14867 456 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 TACR1P25103 407 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 ELAVL4P26378 380 aaKnown RBP11.91□□□□□ -0.5
LIG1-212ENST00000596549 MC3RP41968 323 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 DCAF7P61962 342 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 RPP38P78345 283 aaKnown RBP11.91□□□□□ -0.5
LIG1-212ENST00000596549 PSG6Q00889 435 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 C2orf80Q0P641 193 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 ACSF3Q4G176 576 aaPredicted RBP11.91□□□□□ -0.5
LIG1-212ENST00000596549 NHSL2Q5HYW2 709 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 CFAP157Q5JU67 520 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 WIPI1Q5MNZ9 446 aaPredicted RBP11.91□□□□□ -0.5
LIG1-212ENST00000596549 KANK2Q63ZY3 851 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 TIGD3Q6B0B8 471 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 NOXRED1Q6NXP6 359 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 NUP54Q7Z3B4 507 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 PACS2Q86VP3 889 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 SAMD14Q8IZD0 417 aaPredicted RBP11.91□□□□□ -0.5
LIG1-212ENST00000596549 RIBC1Q8N443 379 aaPredicted RBP11.91□□□□□ -0.5
LIG1-212ENST00000596549 BANPQ8N9N5 519 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 RELL2Q8NC24 303 aaPredicted RBP11.91□□□□□ -0.5
LIG1-212ENST00000596549 C14orf79Q96F83 325 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 EGLN2Q96KS0 407 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 FCRL1Q96LA6 429 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 MIEF1Q9NQG6 463 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 GIMAP4Q9NUV9 329 aa11.91□□□□□ -0.5
LIG1-212ENST00000596549 KLRF1Q9NZS2 232 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms