RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 ANKRD9Q96BM1 317 aaPredicted RBP13.28□□□□□ -0.28
LIG3-205ENST00000585941 OTUB1Q96FW1 271 aaPredicted RBP13.28□□□□□ -0.28
LIG3-205ENST00000585941 TMEM74BQ9NUR3 256 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 SUSD2Q9UGT4 822 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 ZNF232Q9UNY5 417 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 KCNE3Q9Y6H6 103 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 RNF215Q9Y6U7 377 aa13.28□□□□□ -0.28
LIG3-205ENST00000585941 A0A0A6YYC8 382 aaPredicted RBP13.27□□□□□ -0.29
LIG3-205ENST00000585941 CCDC160A6NGH7 325 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 H0YIG0 161 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 I3L1I5 382 aaPredicted RBP13.27□□□□□ -0.29
LIG3-205ENST00000585941 OR10H2O60403 315 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 CTNSO60931 367 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 OR6B1O95007 311 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 CPNE6O95741 557 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 JUNBP17275 347 aaPredicted RBP13.27□□□□□ -0.29
LIG3-205ENST00000585941 ALDH4A1P30038 563 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 GGT2P36268 569 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 TEKQ02763 1124 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 CHRNEQ04844 493 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 DMWDQ09019 674 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 MAP4K2Q12851 820 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 NR1D2Q14995 579 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 MAD2L1BPQ15013 274 aaPredicted RBP13.27□□□□□ -0.29
LIG3-205ENST00000585941 FGD3Q5JSP0 725 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 ZNF770Q6IQ21 691 aaPredicted RBP13.27□□□□□ -0.29
LIG3-205ENST00000585941 PEX5LQ8IYB4 626 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 TMEM52Q8NDY8 209 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 MAFAQ8NHW3 353 aaPredicted RBP13.27□□□□□ -0.29
LIG3-205ENST00000585941 SLC9A6Q92581 669 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 CDS1Q92903 461 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 CTHRC1Q96CG8 243 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 CNDP2Q96KP4 475 aaKnown RBP13.27□□□□□ -0.29
LIG3-205ENST00000585941 PRRC1Q96M27 445 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 ELF4Q99607 663 aaPredicted RBP13.27□□□□□ -0.29
LIG3-205ENST00000585941 FNDC11Q9BVV2 318 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 ANKRA2Q9H9E1 313 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 CCNB1IP1Q9NPC3 277 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 PRDM6Q9NQX0 595 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 IRAK4Q9NWZ3 460 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 MAT2BQ9NZL9 334 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 SNX5Q9Y5X3 404 aa13.27□□□□□ -0.29
LIG3-205ENST00000585941 CACNA1EQ15878 2313 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 IGHV1OR21-1A0A087WYE8 117 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 IGHV5-51A0A0C4DH38 117 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 FAM227AF5H4B4 570 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 ZNF701M0R085 212 aaPredicted RBP13.26□□□□□ -0.29
LIG3-205ENST00000585941 FOXS1O43638 330 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 KIF1CO43896 1103 aaKnown RBP13.26□□□□□ -0.29
LIG3-205ENST00000585941 THBS1P07996 1170 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 ELAVL4P26378 380 aaKnown RBP13.26□□□□□ -0.29
LIG3-205ENST00000585941 GFERP55789 205 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 IGLV3-21P80748 117 aaPredicted RBP13.26□□□□□ -0.29
LIG3-205ENST00000585941 ID2Q02363 134 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 MGAT2Q10469 447 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 LARS2Q15031 903 aaKnown RBP13.26□□□□□ -0.29
LIG3-205ENST00000585941 DUSP5Q16690 384 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 TRMT12Q53H54 448 aaKnown RBP13.26□□□□□ -0.29
LIG3-205ENST00000585941 EIPR1Q53HC9 387 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 PRPF38BQ5VTL8 546 aaKnown RBP13.26□□□□□ -0.29
LIG3-205ENST00000585941 MLIPQ5VWP3 458 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 KCTD8Q6ZWB6 473 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 KMT5CQ86Y97 462 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 AQP11Q8NBQ7 271 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 C7orf57Q8NEG2 295 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 OR9Q2Q8NGE9 314 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 OR4D11Q8NGI4 311 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 ZNF578Q96N58 590 aaPredicted RBP13.26□□□□□ -0.29
LIG3-205ENST00000585941 ARHGDIGQ99819 225 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 PELOQ9BRX2 385 aaKnown RBP13.26□□□□□ -0.29
LIG3-205ENST00000585941 RSPO3Q9BXY4 272 aaPredicted RBP13.26□□□□□ -0.29
LIG3-205ENST00000585941 ANKRD19PQ9H560 264 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 POLR1BQ9H9Y6 1135 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 POLE3Q9NRF9 147 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 RLIMQ9NVW2 624 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 MUTYHQ9UIF7 546 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 A4GNTQ9UNA3 340 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 WDR45Q9Y484 360 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 CEPT1Q9Y6K0 416 aa13.26□□□□□ -0.29
LIG3-205ENST00000585941 GUSBP08236 651 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 ACP2P11117 423 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 GSTT1P30711 240 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 FNTBP49356 437 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 ARL4DP49703 201 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 UGT2B15P54855 530 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 HSD11B2P80365 405 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 SLC13A2Q13183 592 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 DUSP8Q13202 625 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 TUBA3CQ13748 450 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 LAIR2Q6ISS4 152 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 FRRS1Q6ZNA5 592 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 VWA5B2Q8N398 1253 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 SLC25A45Q8N413 288 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 OR52P1PQ8NH57 321 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 MVB12AQ96EY5 273 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 NODALQ96S42 347 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 SDF2Q99470 211 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 NIPSNAP1Q9BPW8 284 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 DUSP23Q9BVJ7 150 aa13.25□□□□□ -0.29
LIG3-205ENST00000585941 DGCR6LQ9BY27 220 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms