RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 KAT2AQ92830 837 aa10.56□□□□□ -0.72
LIG3-204ENST00000585740 C12orf43Q96C57 262 aaKnown RBP10.56□□□□□ -0.72
LIG3-204ENST00000585740 C16orf58Q96GQ5 468 aa10.56□□□□□ -0.72
LIG3-204ENST00000585740 TCTN2Q96GX1 697 aa10.56□□□□□ -0.72
LIG3-204ENST00000585740 CSF3RQ99062 836 aa10.56□□□□□ -0.72
LIG3-204ENST00000585740 SLC38A3Q99624 504 aa10.56□□□□□ -0.72
LIG3-204ENST00000585740 NIPSNAP1Q9BPW8 284 aa10.56□□□□□ -0.72
LIG3-204ENST00000585740 IER2Q9BTL4 223 aa10.56□□□□□ -0.72
LIG3-204ENST00000585740 FNDC11Q9BVV2 318 aa10.56□□□□□ -0.72
LIG3-204ENST00000585740 CCDC90BQ9GZT6 254 aa10.56□□□□□ -0.72
LIG3-204ENST00000585740 CHRNA10Q9GZZ6 450 aa10.56□□□□□ -0.72
LIG3-204ENST00000585740 KLHL25Q9H0H3 589 aa10.56□□□□□ -0.72
LIG3-204ENST00000585740 SLC38A1Q9H2H9 487 aa10.56□□□□□ -0.72
LIG3-204ENST00000585740 ANKRD19PQ9H560 264 aa10.56□□□□□ -0.72
LIG3-204ENST00000585740 IL21RQ9HBE5 538 aa10.56□□□□□ -0.72
LIG3-204ENST00000585740 IMPAD1Q9NX62 359 aa10.56□□□□□ -0.72
LIG3-204ENST00000585740 EPHA6Q9UF33 1036 aa10.56□□□□□ -0.72
LIG3-204ENST00000585740 ZNF232Q9UNY5 417 aa10.56□□□□□ -0.72
LIG3-204ENST00000585740 C19orf53Q9UNZ5 99 aaPredicted RBP10.56□□□□□ -0.72
LIG3-204ENST00000585740 RNF6Q9Y252 685 aa10.56□□□□□ -0.72
LIG3-204ENST00000585740 FAM186AA6NE01 2351 aa10.56□□□□□ -0.72
LIG3-204ENST00000585740 TP53BP1Q12888 1972 aaPredicted RBP10.56□□□□□ -0.72
LIG3-204ENST00000585740 SH3D21A4FU49 640 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 KRBA1A5PL33 1030 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 ZAR1LA6NP61 321 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 CYR61O00622 381 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 FFAR1O14842 300 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 PCDHGA12O60330 932 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 OR10H3O60404 316 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 PLOD3O60568 738 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 COQ9O75208 318 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 HTR1AP08908 422 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 ALOX5P09917 674 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 OSMP13725 252 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 ST6GAL1P15907 406 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 GSTM3P21266 225 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 PCMT1P22061 227 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 EPHA2P29317 976 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 CAPZBP47756 277 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 EPHA4P54764 986 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 MAZP56270 477 aaKnown RBP10.55□□□□□ -0.72
LIG3-204ENST00000585740 NXPH1P58417 271 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 RPL6Q02878 288 aaKnown RBP10.55□□□□□ -0.72
LIG3-204ENST00000585740 ILKQ13418 452 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 LTB4RQ15722 352 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 PRTGQ2VWP7 1150 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 EIPR1Q53HC9 387 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 GARNL3Q5VVW2 1013 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 GTF2IRD2BQ6EKJ0 949 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 OGFOD3Q6PK18 319 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 CD300LDQ6UXZ3 194 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 GTF2IRD2Q86UP8 949 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 C17orf82Q86X59 251 aaPredicted RBP10.55□□□□□ -0.72
LIG3-204ENST00000585740 MCATQ8IVS2 390 aaKnown RBP10.55□□□□□ -0.72
LIG3-204ENST00000585740 PEX5LQ8IYB4 626 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 DNAJC22Q8N4W6 341 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 FAM160A2Q8N612 972 aaPredicted RBP10.55□□□□□ -0.72
LIG3-204ENST00000585740 FRMD1Q8N878 549 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 TMEM105Q8N8V8 129 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 CDRT4Q8N9R6 151 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 TOR1AIP2Q8NFQ8 470 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 OR7G2Q8NG99 324 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 RORBQ92753 470 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 COL26A1Q96A83 441 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 SLC35A4Q96G79 324 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 CD180Q99467 661 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 STACQ99469 402 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 FUZQ9BT04 418 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 POLR2J2Q9GZM3 115 aaKnown RBP10.55□□□□□ -0.72
LIG3-204ENST00000585740 POLR2J3Q9H1A7 115 aaKnown RBP10.55□□□□□ -0.72
LIG3-204ENST00000585740 PIGUQ9H490 435 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 MTHFD2LQ9H903 347 aaPredicted RBP10.55□□□□□ -0.72
LIG3-204ENST00000585740 EQTNQ9NQ60 294 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 RLIMQ9NVW2 624 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 C2orf42Q9NWW7 574 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 A4GNTQ9UNA3 340 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 SATB2Q9UPW6 733 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 CLCA2Q9UQC9 943 aa10.55□□□□□ -0.72
LIG3-204ENST00000585740 MRPS33Q9Y291 106 aaKnown RBP10.55□□□□□ -0.72
LIG3-204ENST00000585740 THADAQ6YHU6 1953 aa10.54□□□□□ -0.72
LIG3-204ENST00000585740 TRBV4-1A0A0J9YWV2 114 aa10.54□□□□□ -0.72
LIG3-204ENST00000585740 SH3PXD2BA1X283 911 aa10.54□□□□□ -0.72
LIG3-204ENST00000585740 TRIM64BA6NI03 449 aa10.54□□□□□ -0.72
LIG3-204ENST00000585740 LMO7DNF2Z398 122 aa10.54□□□□□ -0.72
LIG3-204ENST00000585740 M0R3H8 397 aa10.54□□□□□ -0.72
LIG3-204ENST00000585740 AQP9O43315 295 aa10.54□□□□□ -0.72
LIG3-204ENST00000585740 XPNPEP2O43895 674 aa10.54□□□□□ -0.72
LIG3-204ENST00000585740 WBP4O75554 376 aaKnown RBP10.54□□□□□ -0.72
LIG3-204ENST00000585740 GASTP01350 101 aa10.54□□□□□ -0.72
LIG3-204ENST00000585740 THBS1P07996 1170 aa10.54□□□□□ -0.72
LIG3-204ENST00000585740 RNH1P13489 461 aaKnown RBP10.54□□□□□ -0.72
LIG3-204ENST00000585740 CCNA2P20248 432 aa10.54□□□□□ -0.72
LIG3-204ENST00000585740 NT5EP21589 574 aa10.54□□□□□ -0.72
LIG3-204ENST00000585740 KRT20P35900 424 aa10.54□□□□□ -0.72
LIG3-204ENST00000585740 SHC2P98077 582 aa10.54□□□□□ -0.72
LIG3-204ENST00000585740 CHRNEQ04844 493 aa10.54□□□□□ -0.72
LIG3-204ENST00000585740 BIKQ13323 160 aa10.54□□□□□ -0.72
LIG3-204ENST00000585740 LARS2Q15031 903 aaKnown RBP10.54□□□□□ -0.72
LIG3-204ENST00000585740 TRAM2Q15035 370 aa10.54□□□□□ -0.72
LIG3-204ENST00000585740 TCTE1Q5JU00 501 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms