RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 CANT1Q8WVQ1 401 aa9.51□□□□□ -0.89
SS18-210ENST00000578700 CIDECQ96AQ7 238 aaPredicted RBP9.51□□□□□ -0.89
SS18-210ENST00000578700 EME1Q96AY2 570 aa9.51□□□□□ -0.89
SS18-210ENST00000578700 MOAP1Q96BY2 351 aa9.51□□□□□ -0.89
SS18-210ENST00000578700 ZNF184Q99676 751 aaPredicted RBP9.51□□□□□ -0.89
SS18-210ENST00000578700 Q9H521 79 aa9.51□□□□□ -0.89
SS18-210ENST00000578700 ZNF552Q9H707 407 aaPredicted RBP9.51□□□□□ -0.89
SS18-210ENST00000578700 ZBTB20Q9HC78 741 aaPredicted RBP9.51□□□□□ -0.89
SS18-210ENST00000578700 SLC35C2Q9NQQ7 365 aa9.51□□□□□ -0.89
SS18-210ENST00000578700 PRDM9Q9NQV7 894 aa9.51□□□□□ -0.89
SS18-210ENST00000578700 AGPAT4Q9NRZ5 378 aa9.51□□□□□ -0.89
SS18-210ENST00000578700 SLC6A13Q9NSD5 602 aa9.51□□□□□ -0.89
SS18-210ENST00000578700 TEX10Q9NXF1 929 aaPredicted RBP9.51□□□□□ -0.89
SS18-210ENST00000578700 THUMPD1Q9NXG2 353 aaKnown RBP9.51□□□□□ -0.89
SS18-210ENST00000578700 ITGB1BP2Q9UKP3 347 aa9.51□□□□□ -0.89
SS18-210ENST00000578700 BAG5Q9UL15 447 aa9.51□□□□□ -0.89
SS18-210ENST00000578700 FAF1Q9UNN5 650 aaPredicted RBP9.51□□□□□ -0.89
SS18-210ENST00000578700 EXO1Q9UQ84 846 aaKnown RBP9.51□□□□□ -0.89
SS18-210ENST00000578700 PADI2Q9Y2J8 665 aa9.51□□□□□ -0.89
SS18-210ENST00000578700 PTRH2Q9Y3E5 179 aaKnown RBP9.51□□□□□ -0.89
SS18-210ENST00000578700 DTNAQ9Y4J8 743 aa9.51□□□□□ -0.89
SS18-210ENST00000578700 GMEB1Q9Y692 573 aa9.51□□□□□ -0.89
SS18-210ENST00000578700 DOCK10Q96BY6 2186 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 RNF103-CHMP3A0A140T963 221 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 ERAL1O75616 437 aaKnown RBP9.5□□□□□ -0.89
SS18-210ENST00000578700 KLHL18O94889 574 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 IFNA14P01570 189 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 RAP2AP10114 183 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 ACADSP16219 412 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 HOXB9P17482 250 aaPredicted RBP9.5□□□□□ -0.89
SS18-210ENST00000578700 CSNK2A2P19784 350 aaPredicted RBP9.5□□□□□ -0.89
SS18-210ENST00000578700 GRNP28799 593 aaKnown RBP9.5□□□□□ -0.89
SS18-210ENST00000578700 MAGEA8P43361 318 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 NCBP2P52298 156 aaKnown RBP eCLIP9.5□□□□□ -0.891e-8■■■□□ 16.9
SS18-210ENST00000578700 PER3P56645 1201 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 RIPPLY3P57055 190 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 FOXL2P58012 376 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 SSPNQ14714 243 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 MYBPC3Q14896 1274 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 MLC1Q15049 377 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 RGNQ15493 299 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 VMACQ2NL98 169 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 DEFB134Q4QY38 66 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 TCTE1Q5JU00 501 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 GCNT6Q5T4J0 391 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 OR52E8Q6IFG1 317 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 FRMPD2BQ6IN97 320 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 SLC48A1Q6P1K1 146 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 IZUMO2Q6UXV1 221 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 ZNF793Q6ZN11 406 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 MRGPREQ86SM8 312 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 MCATQ8IVS2 390 aaKnown RBP9.5□□□□□ -0.89
SS18-210ENST00000578700 MCEMP1Q8IX19 187 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 DTWD1Q8N5C7 304 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 C11orf65Q8NCR3 313 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 PNPT1Q8TCS8 783 aaKnown RBP9.5□□□□□ -0.89
SS18-210ENST00000578700 UTP15Q8TED0 518 aaKnown RBP9.5□□□□□ -0.89
SS18-210ENST00000578700 TM9SF4Q92544 642 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 RNF145Q96MT1 663 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 TRAPPC9Q96Q05 1148 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 SEPHS2Q99611 448 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 PKP2Q99959 881 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 BDH2Q9BUT1 245 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 IKZF5Q9H5V7 419 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 RPF2Q9H7B2 306 aaKnown RBP9.5□□□□□ -0.89
SS18-210ENST00000578700 ANKHQ9HCJ1 492 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 LYRM4Q9HD34 91 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 C8orf4Q9NR00 106 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 ADPRHL2Q9NX46 363 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 GMPR2Q9P2T1 348 aaKnown RBP9.5□□□□□ -0.89
SS18-210ENST00000578700 PLCL2Q9UPR0 1127 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 ASB4Q9Y574 426 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 SLC22A7Q9Y694 548 aa9.5□□□□□ -0.89
SS18-210ENST00000578700 PCM1Q15154 2024 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 LOC105369274A0A096LPK9 316 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 LOC102723532A0A0G2JNH3 316 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 A0A1W2PR48 441 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 TCRBV5S2A0A599 114 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 C5orf58C9J3I9 102 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 GNGT2O14610 69 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 PROM1O43490 865 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 DEAF1O75398 565 aaPredicted RBP9.49□□□□□ -0.89
SS18-210ENST00000578700 TIPRLO75663 272 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 BMP10O95393 424 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 ZNF682O95780 498 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 AIFM1O95831 613 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 B3GALT4O96024 378 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 ST6GAL1P15907 406 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 ITGA3P26006 1051 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 PCGF2P35227 344 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 FOLR3P41439 243 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 TXNL4AP83876 142 aaKnown RBP9.49□□□□□ -0.89
SS18-210ENST00000578700 PRR5P85299 388 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 TNFRSF17Q02223 184 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 HSPB3Q12988 150 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 GAB1Q13480 694 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 GNA13Q14344 377 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 LRRC36Q1X8D7 754 aa9.49□□□□□ -0.89
SS18-210ENST00000578700 ZNF630Q2M218 657 aaPredicted RBP9.49□□□□□ -0.89
SS18-210ENST00000578700 LRRC23Q53EV4 343 aaPredicted RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms