RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 DHX9Q08211 1270 aaKnown RBP14.31□□□□□ -0.12
VPS53-218ENST00000575207 KLF1Q13351 362 aaPredicted RBP14.31□□□□□ -0.12
VPS53-218ENST00000575207 TPSAB1Q15661 275 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.31□□□□□ -0.12
VPS53-218ENST00000575207 HLA-DQA1Q5Y7H0 255 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 B3GLCTQ6Y288 498 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 THSD4Q6ZMP0 1018 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 CD200R1Q8TD46 325 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 MTBPQ96DY7 904 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 HIST1H2AHQ96KK5 128 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 SORCS2Q96PQ0 1159 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 GPR21Q99679 349 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 HIST1H2AJQ99878 128 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 H2AFJQ9BTM1 129 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 OSBPL8Q9BZF1 889 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 SAP130Q9H0E3 1048 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 GLRX2Q9NS18 164 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 POU2F3Q9UKI9 436 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 MGAT4BQ9UQ53 548 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 B4DSR2 109 aa14.3□□□□□ -0.12
VPS53-218ENST00000575207 SEC14L5O43304 696 aa14.3□□□□□ -0.12
VPS53-218ENST00000575207 OGNP20774 298 aaKnown RBP14.3□□□□□ -0.12
VPS53-218ENST00000575207 GSTM2P28161 218 aa14.3□□□□□ -0.12
VPS53-218ENST00000575207 HPDP32754 393 aaPredicted RBP14.3□□□□□ -0.12
VPS53-218ENST00000575207 CLDN20P56880 219 aa14.3□□□□□ -0.12
VPS53-218ENST00000575207 CRADDP78560 199 aa14.3□□□□□ -0.12
VPS53-218ENST00000575207 CENPUQ71F23 418 aa14.3□□□□□ -0.12
VPS53-218ENST00000575207 SSX8Q7RTT4 187 aa14.3□□□□□ -0.12
VPS53-218ENST00000575207 KRT35Q92764 455 aa14.3□□□□□ -0.12
VPS53-218ENST00000575207 KISS1RQ969F8 398 aaPredicted RBP14.3□□□□□ -0.12
VPS53-218ENST00000575207 ACSS1Q9NUB1 689 aaPredicted RBP14.3□□□□□ -0.12
VPS53-218ENST00000575207 NPAP1Q9NZP6 1156 aa14.3□□□□□ -0.12
VPS53-218ENST00000575207 PDP1Q9P0J1 537 aaPredicted RBP14.3□□□□□ -0.12
VPS53-218ENST00000575207 ZNF337Q9Y3M9 751 aa14.3□□□□□ -0.12
VPS53-218ENST00000575207 DYRK1BQ9Y463 629 aa14.3□□□□□ -0.12
VPS53-218ENST00000575207 SPACA6W5XKT8 324 aa14.3□□□□□ -0.12
VPS53-218ENST00000575207 COL7A1Q02388 2944 aa14.3□□□□□ -0.12
VPS53-218ENST00000575207 A0A1B0GTH6 734 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 PRAMEF25A6NGN4 478 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 CCT8L1PA6NM43 557 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 EFCAB8A8MWE9 144 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 E7EVH7 732 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 CLEC3AO75596 197 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 HMGCS1Q01581 520 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 PPA1Q15181 289 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 LRRC8EQ6NSJ5 796 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 UGT3A1Q6NUS8 523 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 SLC22A25Q6T423 547 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 TEX29Q8N6K0 151 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 GBP7Q8N8V2 638 aaPredicted RBP14.29□□□□□ -0.12
VPS53-218ENST00000575207 RIT1Q92963 219 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 TMEM186Q96B77 213 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 NAP1L5Q96NT1 182 aaPredicted RBP14.29□□□□□ -0.12
VPS53-218ENST00000575207 PELOQ9BRX2 385 aaKnown RBP14.29□□□□□ -0.12
VPS53-218ENST00000575207 TRMOQ9BU70 441 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 CCDC68Q9H2F9 335 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 ETNK1Q9HBU6 452 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 INTS10Q9NVR2 710 aaKnown RBP14.29□□□□□ -0.12
VPS53-218ENST00000575207 HIF1ANQ9NWT6 349 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 ASIC3Q9UHC3 531 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 MAD1L1Q9Y6D9 718 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 DYNC2H1Q8NCM8 4307 aaKnown RBP14.29□□□□□ -0.12
VPS53-218ENST00000575207 SACSQ9NZJ4 4579 aa14.29□□□□□ -0.12
VPS53-218ENST00000575207 HYDINQ4G0P3 5121 aa14.28□□□□□ -0.12
VPS53-218ENST00000575207 NPIPA5A0A0B4J1W7 369 aa14.28□□□□□ -0.12
VPS53-218ENST00000575207 B4DXG7 233 aa14.28□□□□□ -0.12
VPS53-218ENST00000575207 NPIPA7E9PJI5 369 aa14.28□□□□□ -0.12
VPS53-218ENST00000575207 NPIPA8P0DM63 369 aa14.28□□□□□ -0.12
VPS53-218ENST00000575207 SSTR4P31391 388 aa14.28□□□□□ -0.12
VPS53-218ENST00000575207 SESN2P58004 480 aaPredicted RBP14.28□□□□□ -0.12
VPS53-218ENST00000575207 MAP4K2Q12851 820 aa14.28□□□□□ -0.12
VPS53-218ENST00000575207 ITGADQ13349 1161 aa14.28□□□□□ -0.12
VPS53-218ENST00000575207 IQCB1Q15051 598 aa14.28□□□□□ -0.12
VPS53-218ENST00000575207 SGCBQ16585 318 aa14.28□□□□□ -0.12
VPS53-218ENST00000575207 C1orf229Q6ZS94 237 aaPredicted RBP14.28□□□□□ -0.12
VPS53-218ENST00000575207 SYT14Q8NB59 555 aa14.28□□□□□ -0.12
VPS53-218ENST00000575207 SNX18Q96RF0 628 aa14.28□□□□□ -0.12
VPS53-218ENST00000575207 NDNQ99608 321 aa14.28□□□□□ -0.12
VPS53-218ENST00000575207 SLC6A7Q99884 636 aa14.28□□□□□ -0.12
VPS53-218ENST00000575207 PRRG4Q9BZD6 226 aa14.28□□□□□ -0.12
VPS53-218ENST00000575207 C12orf49Q9H741 205 aa14.28□□□□□ -0.12
VPS53-218ENST00000575207 GRIP1Q9Y3R0 1128 aa14.28□□□□□ -0.12
VPS53-218ENST00000575207 TJP3O95049 919 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 STAMBPO95630 424 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 BCL10O95999 233 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 TUBBP07437 444 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 DHRS4L1P0CG22 281 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 CPN2P22792 545 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 CNTFP26441 200 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 AGTR1P30556 359 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 GALNSP34059 522 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 PTPN7P35236 360 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 DSCR4P56555 118 aaPredicted RBP14.27□□□□□ -0.13
VPS53-218ENST00000575207 SWI5Q1ZZU3 235 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 MFSD12Q6NUT3 480 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 ZNF549Q6P9A3 640 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 TMEM108Q6UXF1 575 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 TMIGD1Q6UXZ0 262 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 TFAP2EQ6VUC0 442 aa14.27□□□□□ -0.13
VPS53-218ENST00000575207 EEF1AKMT1Q8WVE0 214 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms