RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 TAC1P20366 129 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 TIMP3P35625 211 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 KRT6CP48668 564 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 MASP1P48740 699 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 TMED10P49755 219 aaKnown RBP16.5■□□□□ 0.23
CHD3-214ENST00000572579 AGFG1P52594 562 aaKnown RBP16.5■□□□□ 0.23
CHD3-214ENST00000572579 CEBPEQ15744 281 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 HSPB2Q16082 182 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 NSUN5P2Q63ZY6 315 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 GALNT18Q6P9A2 607 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 ZZZ3Q8IYH5 903 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 OR7G2Q8NG99 324 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 OR4N2Q8NGD1 307 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.5■□□□□ 0.23
CHD3-214ENST00000572579 ZNF675Q8TD23 568 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 RNF138Q8WVD3 245 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 ABTB1Q969K4 478 aaPredicted RBP16.5■□□□□ 0.23
CHD3-214ENST00000572579 TMBIM1Q969X1 311 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 EXOSC8Q96B26 276 aaKnown RBP16.5■□□□□ 0.23
CHD3-214ENST00000572579 VSTM2LQ96N03 204 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 G6PC3Q9BUM1 346 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 FAIM2Q9BWQ8 316 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 EBPLQ9BY08 206 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 C12orf65Q9H3J6 166 aaKnown RBP16.5■□□□□ 0.23
CHD3-214ENST00000572579 METTL7AQ9H8H3 244 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 SERHLQ9NQF3 203 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 NMRK1Q9NWW6 199 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 CRIM1Q9NZV1 1036 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 FETUBQ9UGM5 382 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 PSME2Q9UL46 239 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 ZNF780BQ9Y6R6 833 aa16.5■□□□□ 0.23
CHD3-214ENST00000572579 FRG2CA6NGY1 282 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 ACOX3O15254 700 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 SHBGP04278 402 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 RHOXF2BP0C7M4 288 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 BMP5P22003 454 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 DNAJA1P31689 397 aaKnown RBP16.49■□□□□ 0.23
CHD3-214ENST00000572579 BTKQ06187 659 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 PLCXD2Q0VAA5 305 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 LCP2Q13094 533 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 MYBPHQ13203 477 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 CES4AQ5XG92 561 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 SLC30A6Q6NXT4 461 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 IFT20Q8IY31 132 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 C9orf106Q8NAJ2 232 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 OR1J4Q8NGS1 313 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 BTBD9Q96Q07 612 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 RHOXF2Q9BQY4 288 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 SIRT5Q9NXA8 310 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 TBK1Q9UHD2 729 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 FBXL2Q9UKC9 423 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 MAPRE3Q9UPY8 281 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 CFL2Q9Y281 166 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 VPS13CQ709C8 3753 aa16.49■□□□□ 0.23
CHD3-214ENST00000572579 SERTM1A2A2V5 107 aa16.48■□□□□ 0.23
CHD3-214ENST00000572579 TSPAN2O60636 221 aa16.48■□□□□ 0.23
CHD3-214ENST00000572579 ESRRBO95718 433 aa16.48■□□□□ 0.23
CHD3-214ENST00000572579 DRD2P14416 443 aa16.48■□□□□ 0.23
CHD3-214ENST00000572579 TIA1P31483 386 aaKnown RBP eCLIP16.48■□□□□ 0.23
CHD3-214ENST00000572579 GAS1P54826 345 aa16.48■□□□□ 0.23
CHD3-214ENST00000572579 FBXL19-AS1Q494R0 122 aa16.48■□□□□ 0.23
CHD3-214ENST00000572579 C6orf163Q5TEZ5 329 aa16.48■□□□□ 0.23
CHD3-214ENST00000572579 LCA5Q86VQ0 697 aa16.48■□□□□ 0.23
CHD3-214ENST00000572579 TMEM200AQ86VY9 491 aa16.48■□□□□ 0.23
CHD3-214ENST00000572579 LACC1Q8IV20 430 aa16.48■□□□□ 0.23
CHD3-214ENST00000572579 GBP7Q8N8V2 638 aaPredicted RBP16.48■□□□□ 0.23
CHD3-214ENST00000572579 ACMSDQ8TDX5 336 aa16.48■□□□□ 0.23
CHD3-214ENST00000572579 ADOQ96SZ5 270 aa16.48■□□□□ 0.23
CHD3-214ENST00000572579 OSBPL11Q9BXB4 747 aa16.48■□□□□ 0.23
CHD3-214ENST00000572579 SLC35C2Q9NQQ7 365 aa16.48■□□□□ 0.23
CHD3-214ENST00000572579 PRODH2Q9UF12 536 aa16.48■□□□□ 0.23
CHD3-214ENST00000572579 CAMK2AQ9UQM7 478 aa16.48■□□□□ 0.23
CHD3-214ENST00000572579 SETD2Q9BYW2 2564 aaPredicted RBP16.47■□□□□ 0.23
CHD3-214ENST00000572579 PRRC2AP48634 2157 aaKnown RBP16.47■□□□□ 0.23
CHD3-214ENST00000572579 ANKHD1Q8IWZ3 2542 aaKnown RBP16.47■□□□□ 0.23
CHD3-214ENST00000572579 MBD3L4A6NDZ8 208 aaPredicted RBP16.47■□□□□ 0.23
CHD3-214ENST00000572579 MBD3L3A6NE82 208 aaPredicted RBP16.47■□□□□ 0.23
CHD3-214ENST00000572579 PRAMEF25A6NGN4 478 aa16.47■□□□□ 0.23
CHD3-214ENST00000572579 OR6C70A6NIJ9 312 aa16.47■□□□□ 0.23
CHD3-214ENST00000572579 MBD3L5A6NJ08 208 aaPredicted RBP16.47■□□□□ 0.23
CHD3-214ENST00000572579 CD8B2A6NJW9 211 aa16.47■□□□□ 0.23
CHD3-214ENST00000572579 FAM47E-STBD1D6RA91 191 aa16.47■□□□□ 0.23
CHD3-214ENST00000572579 ZIC3O60481 467 aa16.47■□□□□ 0.23
CHD3-214ENST00000572579 PROCP04070 461 aa16.47■□□□□ 0.23
CHD3-214ENST00000572579 KRT15P19012 456 aa16.47■□□□□ 0.23
CHD3-214ENST00000572579 HMOX2P30519 316 aa16.47■□□□□ 0.23
CHD3-214ENST00000572579 UQCRC1P31930 480 aa16.47■□□□□ 0.23
CHD3-214ENST00000572579 STARP49675 285 aa16.47■□□□□ 0.23
CHD3-214ENST00000572579 PKNOX1P55347 436 aa16.47■□□□□ 0.23
CHD3-214ENST00000572579 GFRA1P56159 465 aa16.47■□□□□ 0.23
CHD3-214ENST00000572579 DCAF7P61962 342 aa16.47■□□□□ 0.23
CHD3-214ENST00000572579 RPP38P78345 283 aaKnown RBP16.47■□□□□ 0.23
CHD3-214ENST00000572579 FOXF2Q12947 444 aa16.47■□□□□ 0.23
CHD3-214ENST00000572579 SNTA1Q13424 505 aa16.47■□□□□ 0.23
CHD3-214ENST00000572579 TOMM20Q15388 145 aa16.47■□□□□ 0.23
CHD3-214ENST00000572579 OR5M10Q6IEU7 315 aa16.47■□□□□ 0.23
CHD3-214ENST00000572579 ZYG11AQ6WRX3 759 aa16.47■□□□□ 0.23
CHD3-214ENST00000572579 ADGRE4PQ86SQ3 457 aa16.47■□□□□ 0.23
CHD3-214ENST00000572579 SLC22A9Q8IVM8 553 aa16.47■□□□□ 0.23
CHD3-214ENST00000572579 MBD3L2Q8NHZ7 208 aaPredicted RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms