RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 TO15178 435 aa18.96■□□□□ 0.63
CLN3-219ENST00000565778 TRIM13O60858 407 aa18.96■□□□□ 0.63
CLN3-219ENST00000565778 UGT2B11O75310 529 aa18.96■□□□□ 0.63
CLN3-219ENST00000565778 NME6O75414 186 aaPredicted RBP18.96■□□□□ 0.63
CLN3-219ENST00000565778 RSL1D1O76021 490 aaKnown RBP18.96■□□□□ 0.63
CLN3-219ENST00000565778 ELAVL4P26378 380 aaKnown RBP18.96■□□□□ 0.63
CLN3-219ENST00000565778 KRT20P35900 424 aa18.96■□□□□ 0.63
CLN3-219ENST00000565778 ZFP36L2P47974 494 aaKnown RBP18.96■□□□□ 0.63
CLN3-219ENST00000565778 CDK9P50750 372 aaKnown RBP18.96■□□□□ 0.63
CLN3-219ENST00000565778 IFFO1Q0D2I5 559 aa18.96■□□□□ 0.63
CLN3-219ENST00000565778 CLEC6AQ6EIG7 209 aa18.96■□□□□ 0.63
CLN3-219ENST00000565778 NOXRED1Q6NXP6 359 aa18.96■□□□□ 0.63
CLN3-219ENST00000565778 ANGPTL8Q6UXH0 198 aa18.96■□□□□ 0.63
CLN3-219ENST00000565778 TMBIM1Q969X1 311 aa18.96■□□□□ 0.63
CLN3-219ENST00000565778 TMCO6Q96DC7 493 aa18.96■□□□□ 0.63
CLN3-219ENST00000565778 COL21A1Q96P44 957 aa18.96■□□□□ 0.63
CLN3-219ENST00000565778 TAS2R9Q9NYW1 312 aa18.96■□□□□ 0.63
CLN3-219ENST00000565778 KLRF1Q9NZS2 232 aa18.96■□□□□ 0.63
CLN3-219ENST00000565778 C15orf41Q9Y2V0 281 aa18.96■□□□□ 0.63
CLN3-219ENST00000565778 WBP11Q9Y2W2 641 aaKnown RBP18.96■□□□□ 0.63
CLN3-219ENST00000565778 PCDHGB3Q9Y5G1 929 aa18.96■□□□□ 0.63
CLN3-219ENST00000565778 A0A0G2JNJ9 132 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 AHRRA9YTQ3 701 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 FAM47E-STBD1D6RA91 191 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 SLC28A1O00337 649 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 PLOD3O60568 738 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 ERN1O75460 977 aaKnown RBP18.95■□□□□ 0.62
CLN3-219ENST00000565778 TOXO94900 526 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 JUNP05412 331 aaKnown RBP18.95■□□□□ 0.62
CLN3-219ENST00000565778 HPNP05981 417 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 SSTR2P30874 369 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 NCBP2P52298 156 aaKnown RBP eCLIP18.95■□□□□ 0.62
CLN3-219ENST00000565778 VSNL1P62760 191 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 SNTA1Q13424 505 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 CEBPEQ15744 281 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 FAM71E1Q6IPT2 247 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 ULK2Q8IYT8 1036 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 RIBC1Q8N443 379 aaPredicted RBP18.95■□□□□ 0.62
CLN3-219ENST00000565778 ADOQ96SZ5 270 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 TIMP4Q99727 224 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 GATA5Q9BWX5 397 aaPredicted RBP18.95■□□□□ 0.62
CLN3-219ENST00000565778 OSBPL11Q9BXB4 747 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 UBQLN3Q9H347 655 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 MYNNQ9NPC7 610 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 Q9UFV3 132 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 SLC6A5Q9Y345 797 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 FIS1Q9Y3D6 152 aa18.95■□□□□ 0.62
CLN3-219ENST00000565778 MYO1GB0I1T2 1018 aa18.94■□□□□ 0.62
CLN3-219ENST00000565778 AZIN1O14977 448 aa18.94■□□□□ 0.62
CLN3-219ENST00000565778 RGS14O43566 566 aa18.94■□□□□ 0.62
CLN3-219ENST00000565778 CT45A8P0DMV1 189 aa18.94■□□□□ 0.62
CLN3-219ENST00000565778 CT45A9P0DMV2 189 aa18.94■□□□□ 0.62
CLN3-219ENST00000565778 ADH7P40394 386 aa18.94■□□□□ 0.62
CLN3-219ENST00000565778 CORO7P57737 925 aa18.94■□□□□ 0.62
CLN3-219ENST00000565778 PCLAFQ15004 111 aa18.94■□□□□ 0.62
CLN3-219ENST00000565778 PRSS53Q2L4Q9 553 aa18.94■□□□□ 0.62
CLN3-219ENST00000565778 EIPR1Q53HC9 387 aa18.94■□□□□ 0.62
CLN3-219ENST00000565778 CT45A2Q5DJT8 189 aa18.94■□□□□ 0.62
CLN3-219ENST00000565778 WIPI1Q5MNZ9 446 aaPredicted RBP18.94■□□□□ 0.62
CLN3-219ENST00000565778 TMEM81Q6P7N7 255 aa18.94■□□□□ 0.62
CLN3-219ENST00000565778 SLC44A2Q8IWA5 706 aaPredicted RBP18.94■□□□□ 0.62
CLN3-219ENST00000565778 OR7G2Q8NG99 324 aa18.94■□□□□ 0.62
CLN3-219ENST00000565778 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.94■□□□□ 0.62
CLN3-219ENST00000565778 NTNG2Q96CW9 530 aa18.94■□□□□ 0.62
CLN3-219ENST00000565778 BTBD9Q96Q07 612 aa18.94■□□□□ 0.62
CLN3-219ENST00000565778 STMN4Q9H169 189 aaPredicted RBP18.94■□□□□ 0.62
CLN3-219ENST00000565778 FOLH1BQ9HBA9 442 aa18.94■□□□□ 0.62
CLN3-219ENST00000565778 GALNT9Q9HCQ5 603 aa18.94■□□□□ 0.62
CLN3-219ENST00000565778 TAS2R7Q9NYW3 318 aa18.94■□□□□ 0.62
CLN3-219ENST00000565778 OR6C70A6NIJ9 312 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 ABCB7O75027 752 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 CBR3O75828 277 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 NUDT17P0C025 328 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 PTPN6P29350 595 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 IL12BP29460 328 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 PTGDSP41222 190 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 CRYZQ08257 329 aaKnown RBP18.93■□□□□ 0.62
CLN3-219ENST00000565778 RIPPLY2Q5TAB7 128 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 YRDCQ86U90 279 aaKnown RBP18.93■□□□□ 0.62
CLN3-219ENST00000565778 TRABD2AQ86V40 505 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 PM20D2Q8IYS1 436 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 BANPQ8N9N5 519 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 APOPT1Q96IL0 206 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 METTL2AQ96IZ6 378 aaKnown RBP18.93■□□□□ 0.62
CLN3-219ENST00000565778 EGLN2Q96KS0 407 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 VSTM2LQ96N03 204 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 TRMOQ9BU70 441 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 LRTM1Q9HBL6 345 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 C1orf109Q9NX04 203 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 MAPRE3Q9UPY8 281 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 EXO1Q9UQ84 846 aaKnown RBP18.93■□□□□ 0.62
CLN3-219ENST00000565778 CAMK2AQ9UQM7 478 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 OR10H1Q9Y4A9 318 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 CCL27Q9Y4X3 112 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 PTGDR2Q9Y5Y4 395 aa18.93■□□□□ 0.62
CLN3-219ENST00000565778 CREBBPQ92793 2442 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 PRAMEF25A6NGN4 478 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 SNPHO15079 494 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 COQ9O75208 318 aa18.92■□□□□ 0.62
CLN3-219ENST00000565778 SPAG7O75391 227 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms