RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ADGRE4PQ86SQ3 457 aa15.59■□□□□ 0.09
CLN3-216ENST00000565316 KIF18BQ86Y91 864 aa15.59■□□□□ 0.09
CLN3-216ENST00000565316 TGIF2LYQ8IUE0 185 aa15.59■□□□□ 0.09
CLN3-216ENST00000565316 CHDHQ8NE62 594 aaPredicted RBP15.59■□□□□ 0.09
CLN3-216ENST00000565316 ERP27Q96DN0 273 aa15.59■□□□□ 0.09
CLN3-216ENST00000565316 RMND5BQ96G75 393 aaPredicted RBP15.59■□□□□ 0.09
CLN3-216ENST00000565316 UCN2Q96RP3 112 aa15.59■□□□□ 0.09
CLN3-216ENST00000565316 GALNT9Q9HCQ5 603 aa15.59■□□□□ 0.09
CLN3-216ENST00000565316 HEY2Q9UBP5 337 aa15.59■□□□□ 0.09
CLN3-216ENST00000565316 MCM8Q9UJA3 840 aa15.59■□□□□ 0.09
CLN3-216ENST00000565316 EDARQ9UNE0 448 aa15.59■□□□□ 0.09
CLN3-216ENST00000565316 ZNF780BQ9Y6R6 833 aa15.59■□□□□ 0.09
CLN3-216ENST00000565316 KIAA1549Q9HCM3 1950 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 PRAMEF25A6NGN4 478 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 FRG2CA6NGY1 282 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 OR6C70A6NIJ9 312 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 POC1B-GALNT4F8VUJ3 575 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 OR4F21O95013 312 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 SNRPAP09012 282 aaKnown RBP15.58■□□□□ 0.08
CLN3-216ENST00000565316 EPXP11678 715 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 CD99P14209 185 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 MRPS35P82673 323 aaKnown RBP15.58■□□□□ 0.08
CLN3-216ENST00000565316 SORDQ00796 357 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 CLCQ05315 142 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 CSTF3Q12996 717 aaKnown RBP15.58■□□□□ 0.08
CLN3-216ENST00000565316 RASA2Q15283 850 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 KRTAP21-3Q3LHN1 58 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 UNC50Q53HI1 259 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 ZNF628Q5EBL2 1059 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 FAM180BQ6P0A1 224 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 TIFABQ6ZNK6 161 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 C9orf106Q8NAJ2 232 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 NOA1Q8NC60 698 aaKnown RBP15.58■□□□□ 0.08
CLN3-216ENST00000565316 IFT81Q8WYA0 676 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 BTBD9Q96Q07 612 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 ZNF382Q96SR6 550 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 SERHLQ9NQF3 203 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 KLRF1Q9NZS2 232 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 UTS2RQ9UKP6 389 aa15.58■□□□□ 0.08
CLN3-216ENST00000565316 MED12Q93074 2177 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 A0A087WUV0 522 aaPredicted RBP15.57■□□□□ 0.08
CLN3-216ENST00000565316 C2orf72A6NCS6 295 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 TUBAL3A6NHL2 446 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 BCAS2O75934 225 aaPredicted RBP15.57■□□□□ 0.08
CLN3-216ENST00000565316 URI1O94763 535 aaPredicted RBP15.57■□□□□ 0.08
CLN3-216ENST00000565316 KRT6AP02538 564 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 KRT6BP04259 564 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 CYP4B1P13584 511 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 DRD2P14416 443 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 DNASE1P24855 282 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 TACR1P25103 407 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 GCKP35557 465 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 SLCO1A2P46721 670 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 KRT6CP48668 564 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 ALDH9A1P49189 494 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 GFRA1P56159 465 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 RAE1P78406 368 aaKnown RBP15.57■□□□□ 0.08
CLN3-216ENST00000565316 HMGCS1Q01581 520 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 RCAN2Q14206 197 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 TCHHL1Q5QJ38 904 aaPredicted RBP15.57■□□□□ 0.08
CLN3-216ENST00000565316 ZNF678Q5SXM1 525 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 CDYL2Q8N8U2 506 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 GOT1L1Q8NHS2 421 aaPredicted RBP15.57■□□□□ 0.08
CLN3-216ENST00000565316 RNF138Q8WVD3 245 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 TMBIM1Q969X1 311 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 MBD6Q96DN6 1003 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 SLC35A4Q96G79 324 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 ZFP3Q96NJ6 502 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 COL21A1Q96P44 957 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 HBEGFQ99075 208 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 TUBA1CQ9BQE3 449 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 EHD3Q9NZN3 535 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 MAPRE3Q9UPY8 281 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 PLEKHA6Q9Y2H5 1048 aa15.57■□□□□ 0.08
CLN3-216ENST00000565316 DLX3O60479 287 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 ABCB7O75027 752 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 RCBTB2O95199 551 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 TMIGD3P0DMS9 266 aaPredicted RBP15.56■□□□□ 0.08
CLN3-216ENST00000565316 CT45A8P0DMV1 189 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 CT45A9P0DMV2 189 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 CHN1P15882 459 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 TAC1P20366 129 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 GCAP28676 217 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 AGFG1P52594 562 aaKnown RBP15.56■□□□□ 0.08
CLN3-216ENST00000565316 PSPHP78330 225 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 CEBPEQ15744 281 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 GLE1Q53GS7 698 aaKnown RBP15.56■□□□□ 0.08
CLN3-216ENST00000565316 CT45A2Q5DJT8 189 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 LCA5Q86VQ0 697 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 PLCZ1Q86YW0 608 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 TRIM42Q8IWZ5 723 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 CCDC116Q8IYX3 515 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 SAMD14Q8IZD0 417 aaPredicted RBP15.56■□□□□ 0.08
CLN3-216ENST00000565316 GBP7Q8N8V2 638 aaPredicted RBP15.56■□□□□ 0.08
CLN3-216ENST00000565316 UHMK1Q8TAS1 419 aaKnown RBP15.56■□□□□ 0.08
CLN3-216ENST00000565316 WNT2BQ93097 391 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 TMCO6Q96DC7 493 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 C11orf24Q96F05 449 aaPredicted RBP15.56■□□□□ 0.08
CLN3-216ENST00000565316 VSTM2LQ96N03 204 aa15.56■□□□□ 0.08
CLN3-216ENST00000565316 DOCK7Q96N67 2140 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms