RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 SELENOMQ8WWX9 145 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 CTHRC1Q96CG8 243 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 HBEGFQ99075 208 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 OR2B2Q9GZK3 357 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 ANKRA2Q9H9E1 313 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 ZDHHC18Q9NUE0 388 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 GALNT8Q9NY28 637 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 NINJ2Q9NZG7 142 aa15.33■□□□□ 0.04
CLN3-211ENST00000564091 MED12Q93074 2177 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 ACOX3O15254 700 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 SMIM24O75264 130 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 CBR3O75828 277 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 RCBTB2O95199 551 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 RHOXF2BP0C7M4 288 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 DRD2P14416 443 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 DRD5P21918 477 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 CPA2P48052 419 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 ALDH9A1P49189 494 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 EMDP50402 254 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 SNTA1Q13424 505 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 GGTA1PQ4G0N0 100 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 C10orf62Q5T681 223 aaPredicted RBP15.32■□□□□ 0.04
CLN3-211ENST00000564091 LETMD1Q6P1Q0 360 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 ENPP6Q6UWR7 440 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 GCNT2Q8N0V5 402 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 C17orf53Q8N3J3 647 aaPredicted RBP15.32■□□□□ 0.04
CLN3-211ENST00000564091 TMBIM1Q969X1 311 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 CNRIP1Q96F85 164 aaPredicted RBP15.32■□□□□ 0.04
CLN3-211ENST00000564091 ZNF681Q96N22 645 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 DACH2Q96NX9 599 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 G6PC3Q9BUM1 346 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 SFXN3Q9BWM7 321 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 ACSS3Q9H6R3 686 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 TAS2R10Q9NYW0 307 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 FBXL2Q9UKC9 423 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 PSME2Q9UL46 239 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 NCKAP5O14513 1909 aa15.32■□□□□ 0.04
CLN3-211ENST00000564091 REM1O75628 298 aa15.31■□□□□ 0.04
CLN3-211ENST00000564091 RPS17P08708 135 aaKnown RBP15.31■□□□□ 0.04
CLN3-211ENST00000564091 TCEA1P23193 301 aaKnown RBP15.31■□□□□ 0.04
CLN3-211ENST00000564091 HOXC12P31275 282 aa15.31■□□□□ 0.04
CLN3-211ENST00000564091 PHBP35232 272 aa15.31■□□□□ 0.04
CLN3-211ENST00000564091 MAGEA12P43365 314 aa15.31■□□□□ 0.04
CLN3-211ENST00000564091 PPICP45877 212 aa15.31■□□□□ 0.04
CLN3-211ENST00000564091 HMGCS1Q01581 520 aa15.31■□□□□ 0.04
CLN3-211ENST00000564091 OR5M10Q6IEU7 315 aa15.31■□□□□ 0.04
CLN3-211ENST00000564091 ADGRE4PQ86SQ3 457 aa15.31■□□□□ 0.04
CLN3-211ENST00000564091 PLCZ1Q86YW0 608 aa15.31■□□□□ 0.04
CLN3-211ENST00000564091 CCDC116Q8IYX3 515 aa15.31■□□□□ 0.04
CLN3-211ENST00000564091 C1orf52Q8N6N3 182 aaKnown RBP15.31■□□□□ 0.04
CLN3-211ENST00000564091 WNT2BQ93097 391 aa15.31■□□□□ 0.04
CLN3-211ENST00000564091 ISL2Q96A47 359 aa15.31■□□□□ 0.04
CLN3-211ENST00000564091 TM9SF2Q99805 663 aa15.31■□□□□ 0.04
CLN3-211ENST00000564091 NEUROD4Q9HD90 331 aa15.31■□□□□ 0.04
CLN3-211ENST00000564091 HEY2Q9UBP5 337 aa15.31■□□□□ 0.04
CLN3-211ENST00000564091 PRODH2Q9UF12 536 aa15.31■□□□□ 0.04
CLN3-211ENST00000564091 TMCO1Q9UM00 188 aa15.31■□□□□ 0.04
CLN3-211ENST00000564091 GPR55Q9Y2T6 319 aaPredicted RBP15.31■□□□□ 0.04
CLN3-211ENST00000564091 ZNF780BQ9Y6R6 833 aa15.31■□□□□ 0.04
CLN3-211ENST00000564091 SH3D21A4FU49 640 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 FRG2CA6NGY1 282 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 PLOD2O00469 737 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 TO15178 435 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 MPDZO75970 2070 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 OTCP00480 354 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 INHBAP08476 426 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 CD53P19397 219 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 LHX2P50458 406 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 GFRA1P56159 465 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 DCAF7P61962 342 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 TCHHL1Q5QJ38 904 aaPredicted RBP15.3■□□□□ 0.04
CLN3-211ENST00000564091 SYT10Q6XYQ8 523 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 IFNEQ86WN2 208 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 KRTAP1-3Q8IUG1 177 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 ZNF483Q8TF39 744 aaPredicted RBP15.3■□□□□ 0.04
CLN3-211ENST00000564091 TMCO6Q96DC7 493 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 COL21A1Q96P44 957 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 ADOQ96SZ5 270 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 LRRC1Q9BTT6 524 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 FAIM2Q9BWQ8 316 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 PFDN4Q9NQP4 134 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 ZNF225Q9UK10 706 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 UTS2RQ9UKP6 389 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 SNX6Q9UNH7 406 aa15.3■□□□□ 0.04
CLN3-211ENST00000564091 OR6C70A6NIJ9 312 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 C17orf51A8MQB3 221 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 ESRRBO95718 433 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 TGM6O95932 706 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 SBK3P0C264 359 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 CHN1P15882 459 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 SRD5A2P31213 254 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 CORO7P57737 925 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 LTBQ06643 244 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 TSNAXIP1Q2TAA8 658 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 ZNF628Q5EBL2 1059 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 AAGABQ6PD74 315 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 BIVMQ86UB2 503 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 OR9A2Q8NGT5 310 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 KAT2AQ92830 837 aa15.29■□□□□ 0.04
CLN3-211ENST00000564091 C18orf12Q96KH6 178 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms