RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 NTNG2Q96CW9 530 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 L3HYPDHQ96EM0 354 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 WDYHV1Q96HA8 205 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 TRIB1Q96RU8 372 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 UGT2B28Q9BY64 529 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 GSTO2Q9H4Y5 243 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 MID1IP1Q9NPA3 183 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 SLC35C2Q9NQQ7 365 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 KLRF1Q9NZS2 232 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 PSMC3IPQ9P2W1 217 aaPredicted RBP9.33□□□□□ -0.92
LDLR-214ENST00000560628 KCNN3Q9UGI6 736 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 DCDC2Q9UHG0 476 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 EMCNQ9ULC0 261 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 GPR55Q9Y2T6 319 aaPredicted RBP9.33□□□□□ -0.92
LDLR-214ENST00000560628 L3MBTL1Q9Y468 752 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 PCDHGB3Q9Y5G1 929 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 ADGRG4Q8IZF6 3080 aa9.33□□□□□ -0.92
LDLR-214ENST00000560628 POLQO75417 2590 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 PRAMEF25A6NGN4 478 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 FRG2CA6NGY1 282 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 SMIM23A6NLE4 172 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 G3V2L1 256 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 SYT5O00445 386 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 SNPHO15079 494 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 CDH16O75309 829 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 ZWINTO95229 277 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 IL2RAP01589 272 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 SHBGP04278 402 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 ENO1P06733 434 aaKnown RBP9.32□□□□□ -0.92
LDLR-214ENST00000560628 GSTA1P08263 222 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 ANXA4P09525 319 aaPredicted RBP9.32□□□□□ -0.92
LDLR-214ENST00000560628 CT45A8P0DMV1 189 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 CT45A9P0DMV2 189 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 MYL2P10916 166 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 TCEA1P23193 301 aaKnown RBP9.32□□□□□ -0.92
LDLR-214ENST00000560628 TIA1P31483 386 aaKnown RBP eCLIP9.32□□□□□ -0.92
LDLR-214ENST00000560628 CEACAM8P31997 349 aaPredicted RBP9.32□□□□□ -0.92
LDLR-214ENST00000560628 KIR2DL3P43628 341 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 SLCO1A2P46721 670 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 CORO7P57737 925 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 DCAF7P61962 342 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 SRYQ05066 204 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 HEPACAMQ14CZ8 416 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 SPIN4Q56A73 249 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 CT45A2Q5DJT8 189 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 OR5M10Q6IEU7 315 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 ZYG11AQ6WRX3 759 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 ZZZ3Q8IYH5 903 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 PM20D2Q8IYS1 436 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 WDSUB1Q8N9V3 476 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 RELL2Q8NC24 303 aaPredicted RBP9.32□□□□□ -0.92
LDLR-214ENST00000560628 OR14L1PQ8NHC6 308 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 ZNF675Q8TD23 568 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 COL21A1Q96P44 957 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 BBS4Q96RK4 519 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 ADOQ96SZ5 270 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 OSBPL11Q9BXB4 747 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 SHCBP1LQ9BZQ2 653 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 PRDM14Q9GZV8 571 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 C12orf65Q9H3J6 166 aaKnown RBP9.32□□□□□ -0.92
LDLR-214ENST00000560628 GIMAP4Q9NUV9 329 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 EXO1Q9UQ84 846 aaKnown RBP9.32□□□□□ -0.92
LDLR-214ENST00000560628 STK38LQ9Y2H1 464 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 DCHS2Q6V1P9 2916 aa9.32□□□□□ -0.92
LDLR-214ENST00000560628 CCDC151A5D8V7 595 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 DVL2O14641 736 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 TO15178 435 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 ERN1O75460 977 aaKnown RBP9.31□□□□□ -0.92
LDLR-214ENST00000560628 CRCPO75575 148 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 CBR3O75828 277 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 BCAS2O75934 225 aaPredicted RBP9.31□□□□□ -0.92
LDLR-214ENST00000560628 PROCP04070 461 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 MPIP34949 423 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 TIMP3P35625 211 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 STARP49675 285 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 ZNF136P52737 540 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 SNTA1Q13424 505 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 TESK1Q15569 626 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 IMPG1Q17R60 797 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 ERCC6LQ2NKX8 1250 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 NHSL2Q5HYW2 709 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 CFAP157Q5JU67 520 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 NSUN5P2Q63ZY6 315 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 GALNT18Q6P9A2 607 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 POMZP3Q6PJE2 187 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 PLXDC2Q6UX71 529 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 NPSR1Q6W5P4 371 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 SH2D5Q6ZV89 423 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 LARP4Q71RC2 724 aaKnown RBP eCLIP9.31□□□□□ -0.923e-8■■□□□ 12.3
LDLR-214ENST00000560628 LACC1Q8IV20 430 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 SLC44A2Q8IWA5 706 aaPredicted RBP9.31□□□□□ -0.92
LDLR-214ENST00000560628 TRIM42Q8IWZ5 723 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 OR7G2Q8NG99 324 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 OR4N2Q8NGD1 307 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 UBLCP1Q8WVY7 318 aaPredicted RBP9.31□□□□□ -0.92
LDLR-214ENST00000560628 TMCO6Q96DC7 493 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 C11orf24Q96F05 449 aaPredicted RBP9.31□□□□□ -0.92
LDLR-214ENST00000560628 VSTM2LQ96N03 204 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 FOLH1BQ9HBA9 442 aa9.31□□□□□ -0.92
LDLR-214ENST00000560628 SLC24A3Q9HC58 644 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms