RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 C9orf84Q5VXU9 1444 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 SSH2Q76I76 1423 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 TTC21BQ7Z4L5 1316 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 MED14O60244 1454 aa2.64□□□□□ -1.99
VPS13C-208ENST00000559119 EIF2AK4Q9P2K8 1649 aaKnown RBP2.64□□□□□ -1.99
VPS13C-208ENST00000559119 ABCA10Q8WWZ4 1543 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 RGS12O14924 1447 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 A0A1B0GUA9 196 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 MFSD2BA6NFX1 497 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 K7ERI5 159 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 PDLIM1O00151 329 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 KINO60870 393 aaKnown RBP2.63□□□□□ -1.99
VPS13C-208ENST00000559119 SHOX2O60902 331 aaPredicted RBP2.63□□□□□ -1.99
VPS13C-208ENST00000559119 ERLIN1O75477 346 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 IGHV3-9P01782 118 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 GSTA2P09210 222 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 EZRP15311 586 aaKnown RBP2.63□□□□□ -1.99
VPS13C-208ENST00000559119 ACP1P24666 158 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 TIA1P31483 386 aaKnown RBP eCLIP2.63□□□□□ -1.99
VPS13C-208ENST00000559119 NF2P35240 595 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 MTIF2P46199 727 aaKnown RBP2.63□□□□□ -1.99
VPS13C-208ENST00000559119 ZNF131P52739 623 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 ZNF33BQ06732 778 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 SLMAPQ14BN4 828 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 CDC37Q16543 378 aaPredicted RBP2.63□□□□□ -1.99
VPS13C-208ENST00000559119 FILIP1LQ4L180 1135 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 C1QTNF12Q5T7M4 302 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 CYP4V2Q6ZWL3 525 aaPredicted RBP2.63□□□□□ -1.99
VPS13C-208ENST00000559119 KIAA1328Q86T90 577 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 SPC24Q8NBT2 197 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 FBXO25Q8TCJ0 367 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 TSPAN18Q96SJ8 248 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 BAG1Q99933 345 aaPredicted RBP2.63□□□□□ -1.99
VPS13C-208ENST00000559119 C17orf62Q9BQA9 187 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 AP1M1Q9BXS5 423 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 ADGRL4Q9HBW9 690 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 ZCCHC17Q9NP64 241 aaKnown RBP2.63□□□□□ -1.99
VPS13C-208ENST00000559119 ANKEF1Q9NU02 776 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 DDX19AQ9NUU7 478 aaKnown RBP2.63□□□□□ -1.99
VPS13C-208ENST00000559119 FLVCR1Q9Y5Y0 555 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 KIAA1217Q5T5P2 1943 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 RAI1Q7Z5J4 1906 aaPredicted RBP2.63□□□□□ -1.99
VPS13C-208ENST00000559119 CUL7Q14999 1698 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 WDR62O43379 1518 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 MAGI3Q5TCQ9 1506 aa2.63□□□□□ -1.99
VPS13C-208ENST00000559119 MSH6P52701 1360 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 ABCC11Q96J66 1382 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 DNMBPQ6XZF7 1577 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 FAM135BQ49AJ0 1406 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 YTHDC2Q9H6S0 1430 aaKnown RBP2.62□□□□□ -1.99
VPS13C-208ENST00000559119 FAM170AA1A519 330 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 GTPBP10A4D1E9 387 aaKnown RBP2.62□□□□□ -1.99
VPS13C-208ENST00000559119 C5orf52A6NGY3 159 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 USP27XA6NNY8 438 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 H3BQF6 201 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 LIN7AO14910 233 aaPredicted RBP2.62□□□□□ -1.99
VPS13C-208ENST00000559119 NEBLO76041 1014 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 PVRP15151 417 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 FUT3P21217 361 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 RDXP35241 583 aaKnown RBP2.62□□□□□ -1.99
VPS13C-208ENST00000559119 SGCBQ16585 318 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 BEND6Q5SZJ8 279 aaPredicted RBP2.62□□□□□ -1.99
VPS13C-208ENST00000559119 SLC30A6Q6NXT4 461 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 KRT77Q7Z794 578 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 CEP112Q8N8E3 955 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 LSMEM1Q8N8F7 131 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 KIAA0895Q8NCT3 520 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 MSANTD4Q8NCY6 345 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 ADAMTS16Q8TE57 1224 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 CKAP2Q8WWK9 683 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 PRAM1Q96QH2 718 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 FERMT1Q9BQL6 677 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 ATG101Q9BSB4 218 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 C19orf24Q9BVV8 132 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 IDI2Q9BXS1 227 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 PARD6BQ9BYG5 372 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 CLSTN2Q9H4D0 955 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 DCTPP1Q9H773 170 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 Q9HAA7 133 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 ZNF331Q9NQX6 463 aaPredicted RBP2.62□□□□□ -1.99
VPS13C-208ENST00000559119 GPR173Q9NS66 373 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 CHCHD3Q9NX63 227 aaKnown RBP2.62□□□□□ -1.99
VPS13C-208ENST00000559119 ODF2LQ9ULJ1 636 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 SMC3Q9UQE7 1217 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 SYNJ2O15056 1496 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 SHANK2Q9UPX8 1470 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 RAD54L2Q9Y4B4 1467 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 PBRM1Q86U86 1689 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 ADGBQ8N7X0 1667 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 ITSN2Q9NZM3 1697 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 EFCAB6Q5THR3 1501 aa2.62□□□□□ -1.99
VPS13C-208ENST00000559119 MAP3K5Q99683 1374 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 PPIP5K1Q6PFW1 1433 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 ADGRL3Q9HAR2 1447 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 ERCC6Q03468 1493 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 ATP6AP2A0A1C7CYW4 349 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 A0A1W2PRQ8 180 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 CCDC69A6NI79 296 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 ZSCAN12O43309 604 aa2.61□□□□□ -1.99
VPS13C-208ENST00000559119 SYT7O43581 403 aa2.61□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms