RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 MS4A4EQ96PG1 132 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 FCRL4Q96PJ5 515 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 PIP5K1AQ99755 562 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 NDEL1Q9GZM8 345 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 CACYBPQ9HB71 228 aaKnown RBP11.88□□□□□ -0.51
SHMT2-229ENST00000557348 EVA1BQ9NVM1 165 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 QPCTLQ9NXS2 382 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 NDUFAF4Q9P032 175 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 TRPC4Q9UBN4 977 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 ZNF229Q9UJW7 825 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 MRPS33Q9Y291 106 aaKnown RBP11.88□□□□□ -0.51
SHMT2-229ENST00000557348 CARD8Q9Y2G2 431 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 FANCMQ8IYD8 2048 aa11.88□□□□□ -0.51
SHMT2-229ENST00000557348 A0A087WV62 115 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 LOC105369274A0A096LPK9 316 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 LOC102723532A0A0G2JNH3 316 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 TLCD2A6NGC4 264 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 GLOD5A6NK44 160 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 K7ESF4 209 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 TNFRSF10AO00220 468 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 TNFRSF11BO00300 401 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 CASC3O15234 703 aaKnown RBP11.87□□□□□ -0.51
SHMT2-229ENST00000557348 ELK4P28324 431 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 LSSP48449 732 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 PXNP49023 591 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-229ENST00000557348 XKP51811 444 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 IST1P53990 364 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 MAZP56270 477 aaKnown RBP11.87□□□□□ -0.51
SHMT2-229ENST00000557348 RAB38P57729 211 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 KCNAB2Q13303 367 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 INAVAQ3KP66 663 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 TCTE1Q5JU00 501 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 ZNF544Q6NX49 715 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 FAHD1Q6P587 224 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 ZCCHC12Q6PEW1 402 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 SLC22A16Q86VW1 577 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 OR4N4Q8N0Y3 316 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 AMER2Q8N7J2 671 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 C7orf57Q8NEG2 295 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 XAGE5Q8WWM1 108 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 ELP4Q96EB1 424 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 DHRS1Q96LJ7 313 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 ZNF354BQ96LW1 612 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 ACTRT3Q9BYD9 372 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 NXF2Q9GZY0 626 aaKnown RBP11.87□□□□□ -0.51
SHMT2-229ENST00000557348 DSN1Q9H410 356 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 SMURF2Q9HAU4 748 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 PDP1Q9P0J1 537 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-229ENST00000557348 CRNNQ9UBG3 495 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-229ENST00000557348 SEC14L3Q9UDX4 400 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 OSGIN1Q9UJX0 560 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 SLC9A8Q9Y2E8 581 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 PCDHGA8Q9Y5G5 932 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 U3KQV3 271 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 CUL9Q8IWT3 2517 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 LOC100130705A0A1B0GUX0 176 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 ANKRD34BA5PLL1 514 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 RHPN2P1A8MT19 583 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 TMEM229AB2RXF0 380 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 FAM25AB3EWG3 89 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 FAM25CB3EWG5 89 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 FAM25GB3EWG6 89 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 PIAS2O75928 621 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 MFN2O95140 757 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 OPN1SWP03999 348 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 ATP1B1P05026 303 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 HMGN2P05204 90 aaKnown RBP11.87□□□□□ -0.51
SHMT2-229ENST00000557348 OR12D1P0DN82 309 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 BMP4P12644 408 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 CPMP14384 443 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 PVRP15151 417 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 GNSP15586 552 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 RRM2P31350 389 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 FEN1P39748 380 aaKnown RBP11.87□□□□□ -0.51
SHMT2-229ENST00000557348 XCR1P46094 333 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 KCNJ5P48544 419 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 HMGA2P52926 109 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 GP2P55259 537 aaKnown RBP11.87□□□□□ -0.51
SHMT2-229ENST00000557348 VSX2P58304 361 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-229ENST00000557348 TEKQ02763 1124 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 RUNX2Q13950 521 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 PERM1Q5SV97 790 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 CCNJQ5T5M9 372 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 TMEM107Q6UX40 140 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 GALNT10Q86SR1 603 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 MCATQ8IVS2 390 aaKnown RBP11.87□□□□□ -0.51
SHMT2-229ENST00000557348 ATG16L2Q8NAA4 619 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 NUP43Q8NFH3 380 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 OR7G1Q8NGA0 311 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 OR10Q1Q8NGQ4 319 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 FAR1Q8WVX9 515 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 KLHL6Q8WZ60 621 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 MED30Q96HR3 178 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 TRNT1Q96Q11 434 aaKnown RBP11.87□□□□□ -0.51
SHMT2-229ENST00000557348 APOL4Q9BPW4 351 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 TREX2Q9BQ50 279 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-229ENST00000557348 COL25A1Q9BXS0 654 aaPredicted RBP11.87□□□□□ -0.51
SHMT2-229ENST00000557348 SYNPO2LQ9H987 977 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 KRT84Q9NSB2 600 aa11.87□□□□□ -0.51
SHMT2-229ENST00000557348 CCDC59Q9P031 241 aaKnown RBP11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms