RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	PLCZ1	Q86YW0	608 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	CNEP1R1	Q8N9A8	125 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	NANOS1	Q8WY41	292 aa	Known RBP	11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	DTNBP1	Q96EV8	351 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	PGM2	Q96G03	612 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	SLC39A3	Q9BRY0	314 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	GSX2	Q9BZM3	304 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	ELOVL5	Q9NYP7	299 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	DTX4	Q9Y2E6	619 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	UTP11	Q9Y3A2	253 aa	Known RBP	11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	MRPS18C	Q9Y3D5	142 aa	Known RBP	11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	DOCK7	Q96N67	2140 aa		11.47	□□□□□ -0.57
SHMT2-223	ENST00000556689	PRAMEF25	A6NGN4	478 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	SYCE1L	A8MT33	242 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	C16orf97	H3BN30	126 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	HCRTR2	O43614	444 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	KLK1	P06870	262 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	LTA4H	P09960	611 aa	Known RBP	11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	MTHFD2	P13995	350 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	POU2F1	P14859	743 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	DRD5	P21918	477 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	CNTF	P26441	200 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	CRABP2	P29373	138 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	SRD5A2	P31213	254 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	UGT2B10	P36537	528 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	PTH2R	P49190	550 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	HMGCS1	Q01581	520 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	PLCXD2	Q0VAA5	305 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	BCL2A1	Q16548	175 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	TEX35	Q5T0J7	233 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	GRTP1	Q5TC63	336 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	ZNF474	Q6S9Z5	364 aa	Predicted RBP	11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	FAM111B	Q6SJ93	734 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	C3orf62	Q6ZUJ4	267 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	PLEKHM3	Q6ZWE6	761 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	BTLA	Q7Z6A9	289 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	PPP1R14C	Q8TAE6	165 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	WDR20	Q8TBZ3	569 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	TMCO6	Q96DC7	493 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	SFXN2	Q96NB2	322 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	SERPINI1	Q99574	410 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	ITPA	Q9BY32	194 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	BRINP2	Q9C0B6	783 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	IPPK	Q9H8X2	491 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	RRAGD	Q9NQL2	400 aa	Predicted RBP	11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	RNF11	Q9Y3C5	154 aa		11.46	□□□□□ -0.57
SHMT2-223	ENST00000556689	HIVEP2	P31629	2446 aa		11.46	□□□□□ -0.58
SHMT2-223	ENST00000556689	CSPG4	Q6UVK1	2322 aa		11.46	□□□□□ -0.58
SHMT2-223	ENST00000556689	TCRBV9S1A1T	A0A576	114 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	FAM187A	A6NFU0	413 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	GOLGA6L10	A6NI86	522 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	CRLF1	O75462	422 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	SEMA3D	O95025	777 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	ZNF708	P17019	499 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	KIR2DL2	P43627	348 aa	Predicted RBP	11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	PPIC	P45877	212 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	KCNJ5	P48544	419 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	CLDN18	P56856	261 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	MGAT2	Q10469	447 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	EXOSC7	Q15024	291 aa	Known RBP	11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	PFKFB4	Q16877	469 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	PRICKLE4	Q2TBC4	344 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	CCNYL2	Q5T2Q4	361 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	VWA1	Q6PCB0	445 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	CTAGE3P	Q8IX95	158 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	L3MBTL4	Q8NA19	623 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	ADCY4	Q8NFM4	1077 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	NXNL1	Q96CM4	212 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	COL21A1	Q96P44	957 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	HS3ST6	Q96QI5	342 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	OPN3	Q9H1Y3	402 aa	Predicted RBP	11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	AHSP	Q9NZD4	102 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	EHD3	Q9NZN3	535 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	PRODH2	Q9UF12	536 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	ZNF639	Q9UID6	485 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	FBXL2	Q9UKC9	423 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	ADAM29	Q9UKF5	820 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	PSME2	Q9UL46	239 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	SNX24	Q9Y343	169 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	WIF1	Q9Y5W5	379 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	ARID1A	O14497	2285 aa		11.45	□□□□□ -0.58
SHMT2-223	ENST00000556689	OR6C70	A6NIJ9	312 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	SLC22A20	A6NK97	555 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	FAM159B	A6NKW6	160 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	ZIC3	O60481	467 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	ABCB7	O75027	752 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	GUCY1B2	O75343	617 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	REM1	O75628	298 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	ATP1B1	P05026	303 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	GFAP	P14136	432 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	CSNK2A2	P19784	350 aa	Predicted RBP	11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	FEN1	P39748	380 aa	Known RBP	11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	PIK3CG	P48736	1102 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	ALDH18A1	P54886	795 aa	Known RBP	11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	CALCOCO2	Q13137	446 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	GTF2H2	Q13888	395 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	OR5M10	Q6IEU7	315 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	SLC48A1	Q6P1K1	146 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	GTF2H2C	Q6P1K8	395 aa		11.44	□□□□□ -0.58
SHMT2-223	ENST00000556689	PAGE2	Q7Z2X7	111 aa		11.44	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms