RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 IDH3AP50213 366 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 MEOX1P50221 254 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 AQP5P55064 265 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 WNT3P56703 355 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 NRG3P56975 720 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 FBXW4P57775 412 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 DCAF7P61962 342 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 PHC1P78364 1004 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 MLC1Q15049 377 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 NTRK2Q16620 822 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 CT45A2Q5DJT8 189 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 ZNF324BQ6AW86 544 aaPredicted RBP13□□□□□ -0.33
PTCH1-226ENST00000553011 DESI1Q6ICB0 168 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 BCORP1Q8N888 145 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 GOLM1Q8NBJ4 401 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 CEP70Q8NHQ1 597 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 OR5P2Q8WZ92 322 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 HSPBAP1Q96EW2 488 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 FRMD6Q96NE9 622 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 BTBD9Q96Q07 612 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 BHLHE41Q9C0J9 482 aaPredicted RBP13□□□□□ -0.33
PTCH1-226ENST00000553011 SH2D2AQ9NP31 389 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 EQTNQ9NQ60 294 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 AGPAT4Q9NRZ5 378 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 OLAHQ9NV23 265 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 MAPRE3Q9UPY8 281 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 BAHCC1Q9P281 2608 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 USP9XQ93008 2570 aaPredicted RBP13□□□□□ -0.33
PTCH1-226ENST00000553011 PCNX1Q96RV3 2341 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 PCNX3Q9H6A9 2034 aa13□□□□□ -0.33
PTCH1-226ENST00000553011 PINLYPA6NC86 204 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 KLRC4-KLRK1H3BQV0 150 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 TO15178 435 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 UBDO15205 165 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 ACOX3O15254 700 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 PPM1BO75688 479 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 WISP2O76076 250 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 TGDSO95455 350 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 P04436 131 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 MST1P26927 711 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 IL12AP29459 219 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 PIGAP37287 484 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 RFC3P40938 356 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 CLNS1AP54105 237 aaKnown RBP12.99□□□□□ -0.33
PTCH1-226ENST00000553011 PRKAG1P54619 331 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 GUCY1A3Q02108 690 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 RNFT1Q5M7Z0 435 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 SPANXN4Q5MJ08 99 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 PRAMEF20Q5VT98 475 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 MYO7BQ6PIF6 2116 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 ACAD11Q709F0 780 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 SZRD1Q7Z422 152 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 SLC44A2Q8IWA5 706 aaPredicted RBP12.99□□□□□ -0.33
PTCH1-226ENST00000553011 CLECL1Q8IZS7 167 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 SLC34A3Q8N130 599 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 NATD1Q8N6N6 113 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 FAM98AQ8NCA5 519 aaKnown RBP12.99□□□□□ -0.33
PTCH1-226ENST00000553011 NUP43Q8NFH3 380 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 OR4N2Q8NGD1 307 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 OR8J2Q8NGG1 315 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 DNAJB8Q8NHS0 232 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 PAQR8Q8TEZ7 354 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 NR4A3Q92570 626 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 TMBIM1Q969X1 311 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 TESCQ96BS2 214 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 OMA1Q96E52 524 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 FAM120BQ96EK7 910 aaKnown RBP12.99□□□□□ -0.33
PTCH1-226ENST00000553011 TSPAN10Q9H1Z9 355 aaPredicted RBP12.99□□□□□ -0.33
PTCH1-226ENST00000553011 CLMPQ9H6B4 373 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 CXorf36Q9H7Y0 433 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 TCF7L2Q9NQB0 619 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 SACM1LQ9NTJ5 587 aa12.99□□□□□ -0.33
PTCH1-226ENST00000553011 CHCHD2Q9Y6H1 151 aaPredicted RBP12.99□□□□□ -0.33
PTCH1-226ENST00000553011 MED12Q93074 2177 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 CAPN14A8MX76 684 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 E9PBE3 544 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 POLR3GO15318 223 aaPredicted RBP12.98□□□□□ -0.33
PTCH1-226ENST00000553011 CFLARO15519 480 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 EMC8O43402 210 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 SCN2BO60939 215 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 CRYABP02511 175 aaKnown RBP12.98□□□□□ -0.33
PTCH1-226ENST00000553011 ABCB1P08183 1280 aaPredicted RBP12.98□□□□□ -0.33
PTCH1-226ENST00000553011 IDO1P14902 403 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 KIR3DL1P43629 444 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 UQCRFS1P47985 274 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 DNASE1L1P49184 302 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 TMED10P49755 219 aaKnown RBP12.98□□□□□ -0.33
PTCH1-226ENST00000553011 DGKQP52824 942 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 HBA1P69905 142 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 PSG6Q00889 435 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 PLCXD2Q0VAA5 305 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 RPS6KA2Q15349 733 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 FAM174BQ3ZCQ3 159 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 PDCD4Q53EL6 469 aaKnown RBP12.98□□□□□ -0.33
PTCH1-226ENST00000553011 SLC22A10Q63ZE4 541 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 BICRALQ6AI39 1079 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 ANKRD46Q86W74 232 aa12.98□□□□□ -0.33
PTCH1-226ENST00000553011 DND1Q8IYX4 353 aaKnown RBP12.98□□□□□ -0.33
PTCH1-226ENST00000553011 GALNT11Q8NCW6 608 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms