RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 RAB25P57735 213 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 ACTR1AP61163 376 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 CYP4F2P78329 520 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 PSPHP78330 225 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 HOXC5Q00444 222 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 INSM1Q01101 510 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-216ENST00000552909 DBPQ10586 325 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-216ENST00000552909 TMEM115Q12893 351 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-216ENST00000552909 ILF3Q12906 894 aaKnown RBP eCLIP7.23□□□□□ -1.25
LIMA1-216ENST00000552909 BAMBIQ13145 260 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 TP53BP2Q13625 1128 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 RBBP7Q16576 425 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 CTSL3PQ5NE16 218 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 CLVS2Q5SYC1 327 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 PTRHD1Q6GMV3 140 aaKnown RBP7.23□□□□□ -1.25
LIMA1-216ENST00000552909 PAQR3Q6TCH7 311 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 TMPRSS7Q7RTY8 843 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 C16orf62Q7Z3J2 963 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 NXPE1Q8N323 547 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 C9orf62Q8N4C0 152 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 GPR156Q8NFN8 814 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 TTLQ8NG68 377 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 OR2M4Q96R27 311 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 ZBTB18Q99592 522 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 SPNS1Q9H2V7 528 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 IKZF5Q9H5V7 419 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 AMBNQ9NP70 447 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 SARS2Q9NP81 518 aaKnown RBP7.23□□□□□ -1.25
LIMA1-216ENST00000552909 IL20Q9NYY1 176 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 KCNK6Q9Y257 313 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 CMAHPQ9Y471 501 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 PCDHGA6Q9Y5G7 932 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 PCDHGA1Q9Y5H4 931 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 PRSS21Q9Y6M0 314 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 MGAQ8IWI9 3026 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 PIKFYVEQ9Y2I7 2098 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 TRBV5-4A0A0C4DH59 114 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 MYL12BO14950 172 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 KERAO60938 352 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 ZNF682O95780 498 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 ESR1P03372 595 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 RPS17P08708 135 aaKnown RBP7.23□□□□□ -1.25
LIMA1-216ENST00000552909 CSF3P09919 207 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 ACP5P13686 325 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 MYL12AP19105 171 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 CTSCP53634 463 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 MAZP56270 477 aaKnown RBP7.23□□□□□ -1.25
LIMA1-216ENST00000552909 IKZF1Q13422 519 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 NR0B2Q15466 257 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 AANATQ16613 207 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 MAPKAPK3Q16644 382 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 TSTQ16762 297 aaKnown RBP7.23□□□□□ -1.25
LIMA1-216ENST00000552909 PTCHD3Q3KNS1 767 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 C10orf62Q5T681 223 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-216ENST00000552909 HES3Q5TGS1 186 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 LCN1P1Q5VSP4 162 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 SAXO2Q658L1 398 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 OGFOD3Q6PK18 319 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 TEX261Q6UWH6 196 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 GPALPP1Q8IXQ4 340 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 NAGSQ8N159 534 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 UBE2J2Q8N2K1 259 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 GDPD1Q8N9F7 314 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 SIDT2Q8NBJ9 832 aaKnown RBP7.23□□□□□ -1.25
LIMA1-216ENST00000552909 ZNF680Q8NEM1 530 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 NLGN4YQ8NFZ3 816 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-216ENST00000552909 OR10Q1Q8NGQ4 319 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 STAG3L4Q8TBR4 150 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 AKAP1Q92667 903 aaKnown RBP eCLIP7.23□□□□□ -1.25
LIMA1-216ENST00000552909 FAM120BQ96EK7 910 aaKnown RBP7.23□□□□□ -1.25
LIMA1-216ENST00000552909 HRASLS5Q96KN8 279 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 COPS8Q99627 209 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 GPR21Q99679 349 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 ASPNQ9BXN1 380 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 GSDMCQ9BYG8 508 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 P2RY12Q9H244 342 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 ACTL8Q9H568 366 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 RAD18Q9NS91 495 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 EVA1BQ9NVM1 165 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 C1orf109Q9NX04 203 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 GPR83Q9NYM4 423 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 TBC1D29Q9UFV1 150 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 ZNF490Q9ULM2 529 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-216ENST00000552909 RNF112Q9ULX5 631 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 ABCG2Q9UNQ0 655 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 SAMD4AQ9UPU9 718 aaKnown RBP7.23□□□□□ -1.25
LIMA1-216ENST00000552909 MED16Q9Y2X0 877 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 SAMHD1Q9Y3Z3 626 aaKnown RBP7.23□□□□□ -1.25
LIMA1-216ENST00000552909 POLR3HQ9Y535 204 aaPredicted RBP7.23□□□□□ -1.25
LIMA1-216ENST00000552909 U3KQ87 197 aa7.23□□□□□ -1.25
LIMA1-216ENST00000552909 ZNF106Q9H2Y7 1883 aaKnown RBP7.23□□□□□ -1.25
LIMA1-216ENST00000552909 A0A1W2PRG6 482 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 CIB4A0PJX0 185 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 FAM221BA6H8Z2 402 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 WASHC1A8K0Z3 465 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 AGAP14A8MT82 685 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 C1QTNF9BB2RNN3 333 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 STX16O14662 325 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 SEC14L5O43304 696 aa7.22□□□□□ -1.25
LIMA1-216ENST00000552909 PROM1O43490 865 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms