RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 C4orf46Q504U0 113 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 PDLIM3Q53GG5 364 aaPredicted RBP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 PCID2Q5JVF3 399 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 RBM20Q5T481 1227 aaKnown RBP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 DEPDC1Q5TB30 811 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 ITPRIPL1Q6GPH6 555 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 RTL6Q6ICC9 239 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 KIAA0408Q6ZU52 694 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 DTX2Q86UW9 622 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 GAS2L3Q86XJ1 694 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 CDC20BQ86Y33 519 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 SLC15A3Q8IY34 581 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 KATNAL2Q8IYT4 538 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 RCOR2Q8IZ40 523 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 CLYBLQ8N0X4 340 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 CPSF7Q8N684 471 aaKnown RBP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 CSNK1A1LQ8N752 337 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 HORMAD2Q8N7B1 307 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 ZFP62Q8NB50 900 aaPredicted RBP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 POGLUT1Q8NBL1 392 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 NFAM1Q8NET5 270 aaPredicted RBP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 CFAP61Q8NHU2 1237 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 RND1Q92730 232 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 RAD51AP1Q96B01 352 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 FAM136AQ96C01 138 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 HAUS1Q96CS2 278 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 TM4SF19Q96DZ7 209 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 MMABQ96EY8 250 aaPredicted RBP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 SPATA13Q96N96 652 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 PPP1R2P1Q96PQ5 205 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 GPATCH1Q9BRR8 931 aaKnown RBP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 RAB11FIP5Q9BXF6 653 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 POLDIP3Q9BY77 421 aaKnown RBP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 DRC3Q9H069 523 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 PCDHAC1Q9H158 963 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 MYLK2Q9H1R3 596 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 P2RY12Q9H244 342 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 TP63Q9H3D4 680 aaPredicted RBP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 CDCP1Q9H5V8 836 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 KCNK13Q9HB14 408 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 ANKRD10Q9NXR5 420 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 SPATA7Q9P0W8 599 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 GNPTGQ9UJJ9 305 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 RIMKLBQ9ULI2 386 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 NDRG4Q9ULP0 352 aaKnown RBP3.28□□□□□ -1.88
LIMA1-206ENST00000550611 HYOU1Q9Y4L1 999 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 PCDHGB3Q9Y5G1 929 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 ALG6Q9Y672 507 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 NFS1Q9Y697 457 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 BIRC6Q9NR09 4857 aa3.28□□□□□ -1.88
LIMA1-206ENST00000550611 A0A1B0GVC2 190 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 FAM237BA0A1B0GVD1 139 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 AQP7P3A6NL99 342 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 A6NNC1 897 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 USP27XA6NNY8 438 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 ARHGEF33A8MVX0 844 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 MAGEB17A8MXT2 336 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 HMGB1P1B2RPK0 211 aaPredicted RBP3.27□□□□□ -1.89
LIMA1-206ENST00000550611 H7C0C1 242 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 SYT5O00445 386 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 TXNDC9O14530 226 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 NDC80O14777 642 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 HS6ST1O60243 411 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 DNAJB6O75190 326 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 COQ9O75208 318 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 SLC25A12O75746 678 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 ZWINTO95229 277 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 TNFRSF6BO95407 300 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 METTL18O95568 372 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 GOT2P00505 430 aaKnown RBP3.27□□□□□ -1.89
LIMA1-206ENST00000550611 IGHG3P01860 377 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 APOA4P06727 396 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 ANXA5P08758 320 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 ERVK-10P10266 1014 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 PKMP14618 531 aaKnown RBP3.27□□□□□ -1.89
LIMA1-206ENST00000550611 ZNF24P17028 368 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 IL10P22301 178 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 GABRB3P28472 473 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 CMPK1P30085 196 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 BDKRB1P46663 353 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 ATP5OP48047 213 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 MARCKSL1P49006 195 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 HLCSP50747 726 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 CSE1LP55060 971 aaKnown RBP3.27□□□□□ -1.89
LIMA1-206ENST00000550611 SLC26A5P58743 744 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 ABATP80404 500 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 MPP1Q00013 466 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 OC90Q02509 493 aaPredicted RBP3.27□□□□□ -1.89
LIMA1-206ENST00000550611 MYBPHQ13203 477 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 POU6F1Q14863 301 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 ARHGAP19Q14CB8 494 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 NAA25Q14CX7 972 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 MAPKAPK3Q16644 382 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 DEFB113Q30KQ7 82 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 ZNF750Q32MQ0 723 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 SYTL3Q4VX76 610 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 SFT2D3Q587I9 215 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.27□□□□□ -1.89
LIMA1-206ENST00000550611 ARHGAP11AQ6P4F7 1023 aa3.27□□□□□ -1.89
LIMA1-206ENST00000550611 TTC23LQ6PF05 361 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms