RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 FOXE1O00358 373 aaPredicted RBP15.3■□□□□ 0.04
VPS29-204ENST00000548259 EMC8O43402 210 aa15.3■□□□□ 0.04
VPS29-204ENST00000548259 KERAO60938 352 aa15.3■□□□□ 0.04
VPS29-204ENST00000548259 SEMA3DO95025 777 aa15.3■□□□□ 0.04
VPS29-204ENST00000548259 ALDOAP04075 364 aaKnown RBP15.3■□□□□ 0.04
VPS29-204ENST00000548259 CD8BP10966 210 aa15.3■□□□□ 0.04
VPS29-204ENST00000548259 TBXA2RP21731 343 aa15.3■□□□□ 0.04
VPS29-204ENST00000548259 IVDP26440 423 aa15.3■□□□□ 0.04
VPS29-204ENST00000548259 GMPRP36959 345 aa15.3■□□□□ 0.04
VPS29-204ENST00000548259 PIK3CGP48736 1102 aa15.3■□□□□ 0.04
VPS29-204ENST00000548259 CLDN18P56856 261 aa15.3■□□□□ 0.04
VPS29-204ENST00000548259 SIRPAP78324 504 aa15.3■□□□□ 0.04
VPS29-204ENST00000548259 PSPHP78330 225 aa15.3■□□□□ 0.04
VPS29-204ENST00000548259 CPSF6Q16630 551 aaKnown RBP eCLIP15.3■□□□□ 0.04
VPS29-204ENST00000548259 ZNF474Q6S9Z5 364 aaPredicted RBP15.3■□□□□ 0.04
VPS29-204ENST00000548259 ZNF550Q7Z398 422 aa15.3■□□□□ 0.04
VPS29-204ENST00000548259 COL21A1Q96P44 957 aa15.3■□□□□ 0.04
VPS29-204ENST00000548259 HS3ST6Q96QI5 342 aa15.3■□□□□ 0.04
VPS29-204ENST00000548259 RBBP8Q99708 897 aa15.3■□□□□ 0.04
VPS29-204ENST00000548259 ZNF717Q9BY31 904 aaPredicted RBP15.3■□□□□ 0.04
VPS29-204ENST00000548259 OPN3Q9H1Y3 402 aaPredicted RBP15.3■□□□□ 0.04
VPS29-204ENST00000548259 PPP2R2CQ9Y2T4 447 aa15.3■□□□□ 0.04
VPS29-204ENST00000548259 FREM3P0C091 2139 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 LRRC14BA6NHZ5 514 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 OR6C70A6NIJ9 312 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 EFCAB8A8MWE9 144 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 UGT2B11O75310 529 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 REM1O75628 298 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 GBAP04062 536 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 C8BP07358 591 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 DRD5P21918 477 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 DPP4P27487 766 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 SPRP35270 261 aaPredicted RBP15.29■□□□□ 0.04
VPS29-204ENST00000548259 GP5P40197 560 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 ARL1P40616 181 aaPredicted RBP15.29■□□□□ 0.04
VPS29-204ENST00000548259 PTGDSP41222 190 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 PPICP45877 212 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 MRPS22P82650 360 aaKnown RBP15.29■□□□□ 0.04
VPS29-204ENST00000548259 HMGCS1Q01581 520 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 DR1Q01658 176 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 MAP4K2Q12851 820 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 TNK1Q13470 666 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 VEZF1Q14119 521 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 EFR3AQ14156 821 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 ZKSCAN8Q15776 578 aaPredicted RBP15.29■□□□□ 0.04
VPS29-204ENST00000548259 VWA1Q6PCB0 445 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 ZNF704Q6ZNC4 412 aaPredicted RBP15.29■□□□□ 0.04
VPS29-204ENST00000548259 ZBED8Q8IZ13 594 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 OR4K17Q8NGC6 315 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 PYROXD1Q8WU10 500 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 TRMT61AQ96FX7 289 aaKnown RBP15.29■□□□□ 0.04
VPS29-204ENST00000548259 LRRC1Q9BTT6 524 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 ITPAQ9BY32 194 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 KLHL4Q9C0H6 718 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 PROCRQ9UNN8 238 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 WIF1Q9Y5W5 379 aa15.29■□□□□ 0.04
VPS29-204ENST00000548259 NBEAL1Q6ZS30 2694 aa15.28■□□□□ 0.04
VPS29-204ENST00000548259 LINC01387J3KSC0 135 aa15.28■□□□□ 0.04
VPS29-204ENST00000548259 UBXN8O00124 270 aa15.28■□□□□ 0.04
VPS29-204ENST00000548259 TLX2O43763 284 aaPredicted RBP15.28■□□□□ 0.04
VPS29-204ENST00000548259 SEC31AO94979 1220 aaKnown RBP15.28■□□□□ 0.04
VPS29-204ENST00000548259 ATP1B1P05026 303 aa15.28■□□□□ 0.04
VPS29-204ENST00000548259 GFAPP14136 432 aa15.28■□□□□ 0.04
VPS29-204ENST00000548259 CSNK2A2P19784 350 aaPredicted RBP15.28■□□□□ 0.04
VPS29-204ENST00000548259 CRABP2P29373 138 aa15.28■□□□□ 0.04
VPS29-204ENST00000548259 KIR2DL2P43627 348 aaPredicted RBP15.28■□□□□ 0.04
VPS29-204ENST00000548259 NEK2P51955 445 aa15.28■□□□□ 0.04
VPS29-204ENST00000548259 SLMAPQ14BN4 828 aa15.28■□□□□ 0.04
VPS29-204ENST00000548259 C10orf62Q5T681 223 aaPredicted RBP15.28■□□□□ 0.04
VPS29-204ENST00000548259 SH2D5Q6ZV89 423 aa15.28■□□□□ 0.04
VPS29-204ENST00000548259 ISCA2Q86U28 154 aa15.28■□□□□ 0.04
VPS29-204ENST00000548259 UBQLNLQ8IYU4 475 aa15.28■□□□□ 0.04
VPS29-204ENST00000548259 ZNF611Q8N823 705 aa15.28■□□□□ 0.04
VPS29-204ENST00000548259 MARK4Q96L34 752 aa15.28■□□□□ 0.04
VPS29-204ENST00000548259 EHD3Q9NZN3 535 aa15.28■□□□□ 0.04
VPS29-204ENST00000548259 ADAM29Q9UKF5 820 aa15.28■□□□□ 0.04
VPS29-204ENST00000548259 ZNF175Q9Y473 711 aa15.28■□□□□ 0.04
VPS29-204ENST00000548259 TNPO3Q9Y5L0 923 aaKnown RBP15.28■□□□□ 0.04
VPS29-204ENST00000548259 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP15.27■□□□□ 0.04
VPS29-204ENST00000548259 A0A1W2PS29 197 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 CCDC189A1A4V9 331 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 C1orf226A1L170 272 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 FRG2CA6NGY1 282 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 E7ESA3 106 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 TO15178 435 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 TNFRSF21O75509 655 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 BCAS2O75934 225 aaPredicted RBP15.27■□□□□ 0.04
VPS29-204ENST00000548259 LTA4HP09960 611 aaKnown RBP15.27■□□□□ 0.04
VPS29-204ENST00000548259 FCGR2AP12318 317 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 S1PR1P21453 382 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 IL12BP29460 328 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 CCKARP32238 428 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 IDUAP35475 653 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 MAPK12P53778 367 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 DSCR4P56555 118 aaPredicted RBP15.27■□□□□ 0.04
VPS29-204ENST00000548259 RPS3AP61247 264 aaKnown RBP15.27■□□□□ 0.04
VPS29-204ENST00000548259 FASTKD3Q14CZ7 662 aaKnown RBP15.27■□□□□ 0.04
VPS29-204ENST00000548259 CLEC12BQ2HXU8 276 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 PRICKLE4Q2TBC4 344 aa15.27■□□□□ 0.04
VPS29-204ENST00000548259 CCNYL2Q5T2Q4 361 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms