RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 RAI1Q7Z5J4 1906 aaPredicted RBP14.03□□□□□ -0.16
CLSTN3-213ENST00000541953 FBN1P35555 2871 aaKnown RBP14.02□□□□□ -0.16
CLSTN3-213ENST00000541953 DEFB108AA8MXU0 73 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 PLOD2O00469 737 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 ERN1O75460 977 aaKnown RBP14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 ERAL1O75616 437 aaKnown RBP14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 RCBTB2O95199 551 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 LY6G6DO95868 133 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 ATP1B1P05026 303 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 KRT15P19012 456 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 ADSLP30566 484 aaPredicted RBP14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 CPOXP36551 454 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 ARL1P40616 181 aaPredicted RBP14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 CPA2P48052 419 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 CCNG1P51959 295 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 CORO7P57737 925 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 FAM27E3Q08E93 113 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 MAP4K2Q12851 820 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 UAP1Q16222 522 aaPredicted RBP14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 CCNYL2Q5T2Q4 361 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 OR5M10Q6IEU7 315 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 SLC30A6Q6NXT4 461 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 LETMD1Q6P1Q0 360 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 VWA1Q6PCB0 445 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 CLEC9AQ6UXN8 241 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 NPSR1Q6W5P4 371 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 NUP54Q7Z3B4 507 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 OR4F6Q8NGB9 312 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 OR14L1PQ8NHC6 308 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 TMBIM1Q969X1 311 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 TM4SF18Q96CE8 201 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 ZNF681Q96N22 645 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 DACH2Q96NX9 599 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 SFXN3Q9BWM7 321 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 VPS11Q9H270 941 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 NEUROD4Q9HD90 331 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 XPR1Q9UBH6 696 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 EXO1Q9UQ84 846 aaKnown RBP14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 PCNX3Q9H6A9 2034 aa14.02□□□□□ -0.17
CLSTN3-213ENST00000541953 ARID1AO14497 2285 aa14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 A8MXE2 369 aa14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 H0YC42 278 aa14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 PDYNP01213 254 aa14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 RHOXF2BP0C7M4 288 aa14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 MAPK12P53778 367 aa14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 TPD52P55327 224 aaPredicted RBP14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 CLDN15P56746 228 aa14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 B3GALT5-AS1P59052 145 aa14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 HMGCS1Q01581 520 aa14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 NAB1Q13506 487 aa14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 Q5PR19 223 aa14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 C22orf34Q6ZV56 151 aa14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 KLHL29Q96CT2 875 aa14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 HS3ST6Q96QI5 342 aa14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 NTMT1Q9BV86 223 aa14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 RYDENQ9NUL5 291 aaKnown RBP14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 KLHL28Q9NXS3 571 aa14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 RNF14Q9UBS8 474 aa14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 ADAM29Q9UKF5 820 aa14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 SLC12A4Q9UP95 1085 aa14.01□□□□□ -0.17
CLSTN3-213ENST00000541953 A0A1W2PNV4 684 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 KIAA1324LA8MWY0 1029 aaPredicted RBP14□□□□□ -0.17
CLSTN3-213ENST00000541953 HEXAP06865 529 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 RPS17P08708 135 aaKnown RBP14□□□□□ -0.17
CLSTN3-213ENST00000541953 SBK3P0C264 359 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 CT45A8P0DMV1 189 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 CT45A9P0DMV2 189 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 CHN1P15882 459 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 ZNF708P17019 499 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 NAGAP17050 411 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 MAGEA12P43365 314 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 SERPINB8P50452 374 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 GAS1P54826 345 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 CDH13P55290 713 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 RPP38P78345 283 aaKnown RBP14□□□□□ -0.17
CLSTN3-213ENST00000541953 SF3B4Q15427 424 aaKnown RBP eCLIP14□□□□□ -0.173e-6■■■■□ 20.8
CLSTN3-213ENST00000541953 CT45A2Q5DJT8 189 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 ZNF628Q5EBL2 1059 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 C6orf163Q5TEZ5 329 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 IFNEQ86WN2 208 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 OR4N2Q8NGD1 307 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 RNF138Q8WVD3 245 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 SMPDL3BQ92485 455 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 ZNF592Q92610 1267 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 KAT2AQ92830 837 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 WNT2BQ93097 391 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 ATP6V1E2Q96A05 226 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 COX4I2Q96KJ9 171 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 WFIKKN1Q96NZ8 548 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 UCN2Q96RP3 112 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 TM9SF2Q99805 663 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 GRPEL1Q9HAV7 217 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 ZDHHC18Q9NUE0 388 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 BEX4Q9NWD9 120 aaPredicted RBP14□□□□□ -0.17
CLSTN3-213ENST00000541953 TAS2R10Q9NYW0 307 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 EDARQ9UNE0 448 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 GPR55Q9Y2T6 319 aaPredicted RBP14□□□□□ -0.17
CLSTN3-213ENST00000541953 TNPO3Q9Y5L0 923 aaKnown RBP14□□□□□ -0.17
CLSTN3-213ENST00000541953 HEATR5AQ86XA9 2040 aa14□□□□□ -0.17
CLSTN3-213ENST00000541953 C1orf226A1L170 272 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms