RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-210	ENST00000540975	IL1RAPL2	Q9NP60	686 aa		4.22	□□□□□ -1.73
YBX3-210	ENST00000540975	ACOXL	Q9NUZ1	547 aa		4.22	□□□□□ -1.73
YBX3-210	ENST00000540975	TRPC4	Q9UBN4	977 aa		4.22	□□□□□ -1.73
YBX3-210	ENST00000540975	MAD2L2	Q9UI95	211 aa		4.22	□□□□□ -1.73
YBX3-210	ENST00000540975	CFAP45	Q9UL16	551 aa		4.22	□□□□□ -1.73
YBX3-210	ENST00000540975	BLOC1S6	Q9UL45	172 aa		4.22	□□□□□ -1.73
YBX3-210	ENST00000540975	VIRMA	Q69YN4	1812 aa	Known RBP	4.22	□□□□□ -1.73
YBX3-210	ENST00000540975	SYNJ2	O15056	1496 aa		4.22	□□□□□ -1.73
YBX3-210	ENST00000540975	TDRD6	O60522	2096 aa	Known RBP	4.22	□□□□□ -1.73
YBX3-210	ENST00000540975	MAP3K1	Q13233	1512 aa		4.21	□□□□□ -1.73
YBX3-210	ENST00000540975		F8VZ95	297 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	CYB561D2	O14569	222 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	TYROBP	O43914	113 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	KIN	O60870	393 aa	Known RBP	4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	DUSP14	O95147	198 aa	Known RBP	4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	LYPD3	O95274	346 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	HSPA5	P11021	654 aa	Known RBP	4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	PVR	P15151	417 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	SAA4	P35542	130 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	PRPH	P41219	470 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	ACADSB	P45954	432 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	VCP	P55072	806 aa	Known RBP	4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	SMC1A	Q14683	1233 aa	Known RBP	4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	CD226	Q15762	336 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	MS4A13	Q5J8X5	152 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	SEL1L2	Q5TEA6	688 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	AP1AR	Q63HQ0	302 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	CDC42EP5	Q6NZY7	148 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	PLBD1	Q6P4A8	553 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	TMEM270	Q6UE05	265 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	BCL2L2	Q92843	193 aa	Predicted RBP	4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	OR5M11	Q96RB7	305 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	NACA2	Q9H009	215 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	IKZF5	Q9H5V7	419 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	NRN1	Q9NPD7	142 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	MRPS2	Q9Y399	296 aa	Known RBP	4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	ATP6V0A2	Q9Y487	856 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	ABCC8	Q09428	1581 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	ABCA5	Q8WWZ7	1642 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	MYOM3	Q5VTT5	1437 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	AKNA	Q7Z591	1439 aa		4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	RRBP1	Q9P2E9	1410 aa	Known RBP	4.21	□□□□□ -1.74
YBX3-210	ENST00000540975	PRX	Q9BXM0	1461 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	ATAD2B	Q9ULI0	1458 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	LINC00854	A0A1B0GVQ3	168 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	LRRD1	A4D1F6	860 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	ACP1	P24666	158 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	PRKAR2B	P31323	418 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	HPD	P32754	393 aa	Predicted RBP	4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	ARHGDIB	P52566	201 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	PPP2R5C	Q13362	524 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	CAPRIN1	Q14444	709 aa	Known RBP	4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	EXOSC7	Q15024	291 aa	Known RBP	4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	TAF7	Q15545	349 aa	Predicted RBP	4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	PKN2	Q16513	984 aa	Known RBP	4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	SHROOM1	Q2M3G4	852 aa	Predicted RBP	4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	HKDC1	Q2TB90	917 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	RABL6	Q3YEC7	729 aa	Predicted RBP	4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	IFI44L	Q53G44	452 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	LCE3A	Q5TA76	89 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	RAPH1	Q70E73	1250 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	ASRGL1	Q7L266	308 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	GPR137C	Q8N3F9	429 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	TMCO5A	Q8N6Q1	288 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	OR4A16	Q8NH70	328 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	TFB1M	Q8WVM0	346 aa	Known RBP	4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	FAF2	Q96CS3	445 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	GPR137	Q96N19	417 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	CASD1	Q96PB1	797 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	TCHP	Q9BT92	498 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	ZCCHC3	Q9NUD5	404 aa	Known RBP	4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	ZNHIT6	Q9NWK9	470 aa	Known RBP	4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	QPCTL	Q9NXS2	382 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	FBXW2	Q9UKT8	454 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	BARX2	Q9UMQ3	279 aa	Predicted RBP	4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	RNF115	Q9Y4L5	304 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	PTPRU	Q92729	1446 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	RAD50	Q92878	1312 aa		4.2	□□□□□ -1.74
YBX3-210	ENST00000540975	GPRASP1	Q5JY77	1395 aa		4.19	□□□□□ -1.74
YBX3-210	ENST00000540975	C5orf51	A6NDU8	294 aa		4.19	□□□□□ -1.74
YBX3-210	ENST00000540975		H0Y9J4	135 aa		4.19	□□□□□ -1.74
YBX3-210	ENST00000540975	CHEK1	O14757	476 aa		4.19	□□□□□ -1.74
YBX3-210	ENST00000540975	KRT6A	P02538	564 aa		4.19	□□□□□ -1.74
YBX3-210	ENST00000540975	KRT6B	P04259	564 aa		4.19	□□□□□ -1.74
YBX3-210	ENST00000540975	SFTPB	P07988	381 aa		4.19	□□□□□ -1.74
YBX3-210	ENST00000540975	KRT6C	P48668	564 aa		4.19	□□□□□ -1.74
YBX3-210	ENST00000540975	PRKCE	Q02156	737 aa		4.19	□□□□□ -1.74
YBX3-210	ENST00000540975	MRPL28	Q13084	256 aa	Known RBP	4.19	□□□□□ -1.74
YBX3-210	ENST00000540975	KRT31	Q15323	416 aa		4.19	□□□□□ -1.74
YBX3-210	ENST00000540975	GALNT17	Q6IS24	598 aa		4.19	□□□□□ -1.74
YBX3-210	ENST00000540975	PRSS48	Q7RTY5	328 aa		4.19	□□□□□ -1.74
YBX3-210	ENST00000540975	FBXO16	Q8IX29	292 aa	Predicted RBP	4.19	□□□□□ -1.74
YBX3-210	ENST00000540975	RNASE8	Q8TDE3	154 aa	Known RBP	4.19	□□□□□ -1.74
YBX3-210	ENST00000540975	ANKRD49	Q8WVL7	239 aa		4.19	□□□□□ -1.74
YBX3-210	ENST00000540975	ZNF75CP	Q92670	426 aa	Predicted RBP	4.19	□□□□□ -1.74
YBX3-210	ENST00000540975	RAB39B	Q96DA2	213 aa		4.19	□□□□□ -1.74
YBX3-210	ENST00000540975	VSIG2	Q96IQ7	327 aa		4.19	□□□□□ -1.74
YBX3-210	ENST00000540975	C9orf85	Q96MD7	179 aa		4.19	□□□□□ -1.74
YBX3-210	ENST00000540975	CPXM1	Q96SM3	734 aa		4.19	□□□□□ -1.74
YBX3-210	ENST00000540975	MRPL9	Q9BYD2	267 aa	Known RBP	4.19	□□□□□ -1.74

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