RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 TECRLQ5HYJ1 363 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 CCNYL2Q5T2Q4 361 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 MROH9Q5TGP6 573 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 ZDHHC24Q6UX98 284 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 CLEC9AQ6UXN8 241 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 Q71RC1 249 aaPredicted RBP12.32□□□□□ -0.44
SS18-204ENST00000539244 IFNEQ86WN2 208 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 OR14L1PQ8NHC6 308 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 RNF138Q8WVD3 245 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 INTS12Q96CB8 462 aaKnown RBP12.32□□□□□ -0.44
SS18-204ENST00000539244 COX4I2Q96KJ9 171 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 BRINP2Q9C0B6 783 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 ZBTB26Q9HCK0 441 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 KLRF1Q9NZS2 232 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 CPSF2Q9P2I0 782 aaKnown RBP12.32□□□□□ -0.44
SS18-204ENST00000539244 NDRG3Q9UGV2 375 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 PACSIN3Q9UKS6 424 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 MAPRE3Q9UPY8 281 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 PLLPQ9Y342 182 aa12.32□□□□□ -0.44
SS18-204ENST00000539244 A0A1B0GTL3 188 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 C2orf72A6NCS6 295 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 OR6C70A6NIJ9 312 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 STX16-NPEPL1H3BU86 382 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 PLOD2O00469 737 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 STX16O14662 325 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 MSTNO14793 375 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 CASKO14936 926 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 ALDOAP04075 364 aaKnown RBP12.31□□□□□ -0.44
SS18-204ENST00000539244 CRHP06850 196 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 ZNF708P17019 499 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 CNTFP26441 200 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 EMDP50402 254 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 CLDN18P56856 261 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 HMGCS1Q01581 520 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 SRYQ05066 204 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 GALNT1Q10472 559 aaPredicted RBP12.31□□□□□ -0.44
SS18-204ENST00000539244 IFT88Q13099 833 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 EXOSC7Q15024 291 aaKnown RBP12.31□□□□□ -0.44
SS18-204ENST00000539244 AAGABQ6PD74 315 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 PRSS57Q6UWY2 283 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 COMMD6Q7Z4G1 85 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 CCDC25Q86WR0 208 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 PLCZ1Q86YW0 608 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 GCNT2Q8N0V5 402 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 PTGR2Q8N8N7 351 aaPredicted RBP12.31□□□□□ -0.44
SS18-204ENST00000539244 GBP7Q8N8V2 638 aaPredicted RBP12.31□□□□□ -0.44
SS18-204ENST00000539244 SIMC1Q8NDZ2 872 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 OR52R1Q8NGF1 315 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 ATP6V1E2Q96A05 226 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 DTNBP1Q96EV8 351 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 SLC35A4Q96G79 324 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 ZNF681Q96N22 645 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 TAS2R10Q9NYW0 307 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 PRODH2Q9UF12 536 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 BCAP29Q9UHQ4 241 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 PCTPQ9UKL6 214 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 TMCO1Q9UM00 188 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 EIF3LQ9Y262 564 aaKnown RBP12.31□□□□□ -0.44
SS18-204ENST00000539244 DLGAP4Q9Y2H0 992 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 GPR55Q9Y2T6 319 aaPredicted RBP12.31□□□□□ -0.44
SS18-204ENST00000539244 UTP11Q9Y3A2 253 aaKnown RBP12.31□□□□□ -0.44
SS18-204ENST00000539244 WIF1Q9Y5W5 379 aa12.31□□□□□ -0.44
SS18-204ENST00000539244 A0A1W2PNV4 684 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 DEFB108AA8MXU0 73 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 SIAH2O43255 324 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 CTIFO43310 598 aaKnown RBP12.3□□□□□ -0.44
SS18-204ENST00000539244 ABCB7O75027 752 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 TYK2P29597 1187 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 DEKP35659 375 aaKnown RBP12.3□□□□□ -0.44
SS18-204ENST00000539244 FEN1P39748 380 aaKnown RBP12.3□□□□□ -0.44
SS18-204ENST00000539244 STARP49675 285 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 SERPINB8P50452 374 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 TRA2BP62995 288 aaKnown RBP12.3□□□□□ -0.44
SS18-204ENST00000539244 DUSP2Q05923 314 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 BCL2A1Q16548 175 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 TRMT12Q53H54 448 aaKnown RBP12.3□□□□□ -0.44
SS18-204ENST00000539244 Q5PR19 223 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 PLXDC2Q6UX71 529 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 PLD6Q8N2A8 252 aaKnown RBP12.3□□□□□ -0.44
SS18-204ENST00000539244 ZNF675Q8TD23 568 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 ZNF592Q92610 1267 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 PIGTQ969N2 578 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 TM4SF18Q96CE8 201 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 TMCO6Q96DC7 493 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 CNRIP1Q96F85 164 aaPredicted RBP12.3□□□□□ -0.44
SS18-204ENST00000539244 NSUN5Q96P11 429 aaKnown RBP12.3□□□□□ -0.44
SS18-204ENST00000539244 COL21A1Q96P44 957 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 BTBD9Q96Q07 612 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 ZNF395Q9H8N7 513 aaPredicted RBP12.3□□□□□ -0.44
SS18-204ENST00000539244 BRF2Q9HAW0 419 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 EHD3Q9NZN3 535 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 PSME2Q9UL46 239 aa12.3□□□□□ -0.44
SS18-204ENST00000539244 TSPAN2O60636 221 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 ERAL1O75616 437 aaKnown RBP12.29□□□□□ -0.44
SS18-204ENST00000539244 BCAS2O75934 225 aaPredicted RBP12.29□□□□□ -0.44
SS18-204ENST00000539244 TGM6O95932 706 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 RBP1P09455 135 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 PCSK2P16519 638 aa12.29□□□□□ -0.44
SS18-204ENST00000539244 ARL1P40616 181 aaPredicted RBP12.29□□□□□ -0.44
SS18-204ENST00000539244 MC3RP41968 323 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms