RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 HGDQ93099 445 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 ZNF597Q96LX8 424 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 VSTM2LQ96N03 204 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 RILPQ96NA2 401 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 BTBD9Q96Q07 612 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 NODALQ96S42 347 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 TP63Q9H3D4 680 aaPredicted RBP13.56□□□□□ -0.24
USP28-204ENST00000537642 GLIPR2Q9H4G4 154 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 FOLH1BQ9HBA9 442 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 TNFRSF10DQ9UBN6 386 aa13.56□□□□□ -0.24
USP28-204ENST00000537642 KLF2Q9Y5W3 355 aaPredicted RBP13.56□□□□□ -0.24
USP28-204ENST00000537642 TRGV5A0A0B4J1U4 118 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 OR14I1A6ND48 311 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 PIP5K1BO14986 540 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 CTIFO43310 598 aaKnown RBP13.55□□□□□ -0.24
USP28-204ENST00000537642 HCN1O60741 890 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 UGT2B11O75310 529 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 SNX4O95219 450 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 SDC1P18827 310 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 SERPINB5P36952 375 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 MAN2A2P49641 1150 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 CORO7P57737 925 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 RPL38P63173 70 aaKnown RBP13.55□□□□□ -0.24
USP28-204ENST00000537642 RPP38P78345 283 aaKnown RBP13.55□□□□□ -0.24
USP28-204ENST00000537642 GXYLT1Q4G148 440 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 TNFAIP8L3Q5GJ75 292 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 CES4AQ5XG92 561 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 TMEM198Q66K66 360 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 SP5Q6BEB4 398 aaPredicted RBP13.55□□□□□ -0.24
USP28-204ENST00000537642 NPSR1Q6W5P4 371 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 NUP54Q7Z3B4 507 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 EXOC3L1Q86VI1 746 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 DDIASQ8IXT1 998 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 SLC34A3Q8N130 599 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 RPRMLQ8N4K4 120 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 OR5M9Q8NGP3 310 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 AGR3Q8TD06 166 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 GFM2Q969S9 779 aaKnown RBP13.55□□□□□ -0.24
USP28-204ENST00000537642 ZBTB9Q96C00 473 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 PKNOX2Q96KN3 472 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 AMDHD1Q96NU7 426 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 ZIM3Q96PE6 472 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 CCT7Q99832 543 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 STMN4Q9H169 189 aaPredicted RBP13.55□□□□□ -0.24
USP28-204ENST00000537642 SLC6A15Q9H2J7 730 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 LDAHQ9H6V9 325 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 ACKR4Q9NPB9 350 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 PNPLA3Q9NST1 481 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 QPCTLQ9NXS2 382 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 SPRR3Q9UBC9 169 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 ZDHHC2Q9UIJ5 367 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 CENPEQ02224 2701 aa13.55□□□□□ -0.24
USP28-204ENST00000537642 CELSR2Q9HCU4 2923 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 A0A087WV62 115 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 BCKDKO14874 412 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 ERN1O75460 977 aaKnown RBP13.54□□□□□ -0.24
USP28-204ENST00000537642 TUBBP07437 444 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 GDF1P27539 372 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 HTR1EP28566 365 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 NTSP30990 170 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 PTGDSP41222 190 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 MC3RP41968 323 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 SERPINB4P48594 390 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 ZNF630Q2M218 657 aaPredicted RBP13.54□□□□□ -0.24
USP28-204ENST00000537642 GALNTL6Q49A17 601 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 ZNF385BQ569K4 471 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 XKR7Q5GH72 579 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 CEP85LQ5SZL2 805 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 ANKRD26P1Q6NSI1 321 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 TMEM81Q6P7N7 255 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 TMEM107Q6UX40 140 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 PACS2Q86VP3 889 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 NUDCD3Q8IVD9 361 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 HOMEZQ8IX15 550 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 TMBIM1Q969X1 311 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 TMEM41AQ96HV5 264 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 GNRHR2Q96P88 292 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 TSSK3Q96PN8 268 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 UBQLN3Q9H347 655 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 EXO5Q9H790 373 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 METTL7AQ9H8H3 244 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 SSU72Q9NP77 194 aaKnown RBP13.54□□□□□ -0.24
USP28-204ENST00000537642 TAS2R9Q9NYW1 312 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 B4GALT7Q9UBV7 327 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 GIMAP2Q9UG22 337 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 BAIAP2L1Q9UHR4 511 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 TMED5Q9Y3A6 229 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 NOTCH2Q04721 2471 aa13.54□□□□□ -0.24
USP28-204ENST00000537642 PKDREJQ9NTG1 2253 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 OR6C70A6NIJ9 312 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 PLOD2O00469 737 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 AKAP10O43572 662 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 TSPAN2O60636 221 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 TBX19O60806 448 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 REM1O75628 298 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 SLITRK5O94991 958 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 PSMG1O95456 288 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 CLDN14O95500 239 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 MASP1P48740 699 aa13.53□□□□□ -0.24
USP28-204ENST00000537642 TRPC1P48995 793 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms